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KX889068.2__APC46106.1__vBVspPpVa5_0081__00080
Bact-VirKX889068.2__APC46106.1__vBVspPpVa5_0081__00080
Identity
- Accession:
- KX889068 ↗
- Kingdom:
- phage
Quality
75.4
mean pLDDT
Taxonomy
TaxID: 1913109
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-71
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2g9wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 54.0 | 5.56e-01 | 90.1% | 76.1% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.74 | 51.0 | 4.74e-01 | 94.4% | 56.7% |
| 3e1sA01 | 1.10.10.2220 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.73 | 56.0 | 5.14e-01 | 94.4% | 62.1% |
| 3crmA02 | 1.10.287.890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain | 0.73 | 47.0 | 4.41e-01 | 84.5% | 54.8% |
| 3t46A00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.72 | 38.0 | 3.75e-01 | 98.6% | 49.3% |
| 1rykA00 | 1.10.1470.10 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ | 0.71 | 48.0 | 4.86e-01 | 88.7% | 71.0% |
| 1sd4A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 47.0 | 4.92e-01 | 91.5% | 79.7% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.68 | 59.0 | 5.29e-01 | 100.0% | 69.1% |
| 6mh4A03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.68 | 38.0 | 3.71e-01 | 77.5% | 50.6% |
| 4ye6A02 | 1.10.10.2420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.66 | 50.0 | 5.39e-01 | 90.1% | 100.0% |
| 1te2A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.65 | 49.0 | 4.94e-01 | 98.6% | 81.9% |
| 3tl4X02 | 1.10.10.2420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.65 | 52.0 | 5.18e-01 | 93.0% | 87.5% |
| 3c18A02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.63 | 40.0 | 3.35e-01 | 70.4% | 39.0% |
| 1gcvA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.61 | 53.0 | 4.34e-01 | 100.0% | 92.1% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.61 | 43.0 | 4.46e-01 | 98.6% | 80.6% |
| 2nrlA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.61 | 53.0 | 4.27e-01 | 100.0% | 95.2% |
| 3o2pE00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 45.0 | 4.34e-01 | 95.8% | 67.4% |
| 2icwG02 | 1.10.10.530 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 | 0.60 | 49.0 | 4.62e-01 | 100.0% | 74.2% |
| 3t69A02 | 3.30.420.310 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain | 0.60 | 46.0 | 3.27e-01 | 100.0% | 26.5% |
| 3ubcA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.59 | 49.0 | 4.15e-01 | 97.2% | 95.4% |
| 1ax8A00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.57 | 51.0 | 4.14e-01 | 98.6% | 53.1% |
| 3vprA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 45.0 | 3.58e-01 | 85.9% | 60.7% |
| 3fy6A01 | 3.30.2210.10 | Alpha Beta › 2-Layer Sandwich › Integron cassette protein fold › Integron cassette protein superfamily | 0.57 | 47.0 | 4.12e-01 | 91.5% | 75.7% |
| 3vayA02 | 1.20.120.1600 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.57 | 48.0 | 4.53e-01 | 97.2% | 80.5% |
| 3fhnA05 | 1.10.10.2270 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Dsl1p vesicle tethering complex, Tip20p subunit, domain E | 0.56 | 42.0 | 4.32e-01 | 95.8% | 91.0% |
| 2looA02 | 1.10.10.1740 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transmembrane protein 14-like | 0.55 | 46.0 | 4.61e-01 | 95.8% | 92.0% |
| 2whnA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.55 | 48.0 | 4.14e-01 | 95.8% | 67.3% |
| 3u3iA02 | 1.20.58.1110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 44.0 | 3.87e-01 | 91.5% | 58.3% |
| 2oocB00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.54 | 47.0 | 4.19e-01 | 100.0% | 100.0% |
| 3vw4A01 | 1.10.340.50 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.54 | 43.0 | 4.05e-01 | 95.8% | 70.7% |
| 3ljcA02 | 1.20.58.1480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 39.0 | 3.31e-01 | 78.9% | 54.0% |
| 1j5wA02 | 1.20.58.180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 | 0.53 | 44.0 | 4.28e-01 | 88.7% | 84.4% |
| 2c5iT00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 46.0 | 4.15e-01 | 94.4% | 89.4% |
| 4qdnA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.53 | 43.0 | 3.76e-01 | 94.4% | 72.9% |
| 1xx7A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.53 | 48.0 | 3.58e-01 | 100.0% | 45.9% |
| 1u5pA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 43.0 | 3.75e-01 | 93.0% | 84.3% |
| 1k8kG00 | 1.25.40.190 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Actin-related protein 2/3 complex subunit 5 | 0.50 | 38.0 | 3.19e-01 | 85.9% | 64.0% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.50 | 43.0 | 4.07e-01 | 93.0% | 80.0% |
| 3clhA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.50 | 40.0 | 3.24e-01 | 90.1% | 68.5% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4020548 | 7579.1.1.58 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF829 | 0.77 | 56.0 | 3.63e-01 | 76.1% | 62.7% |
| 2507075 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.73 | 51.0 | 4.82e-01 | 90.1% | 61.2% |
| 4174856 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.73 | 66.0 | 4.44e-01 | 100.0% | 44.3% |
| 4959424 | 103.6.1.0 ↗ | alpha arrays › RuvA-C › FGAM synthase PurL, linker domain › FGAM synthase PurL, linker domain | 0.72 | 52.0 | 5.80e-01 | 84.5% | 98.2% |
| 5025549 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 54.0 | 5.57e-01 | 93.0% | 89.2% |
| 4937143 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.71 | 53.0 | 4.05e-01 | 88.7% | 35.0% |
| 5012907 | 3860.1.1.0 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm | 0.71 | 60.0 | 4.28e-01 | 98.6% | 30.9% |
| 5067099 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.71 | 55.0 | 4.48e-01 | 84.5% | 71.1% |
| 3829115 | 101.1.1.270 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 | 0.67 | 47.0 | 4.88e-01 | 97.2% | 81.5% |
| 3934128 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 46.0 | 5.06e-01 | 97.2% | 94.5% |
| 3178384 | 4969.1.1.1 ↗ | alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B | 0.66 | 44.0 | 3.19e-01 | 77.5% | 25.9% |
| 5021783 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.65 | 56.0 | 4.07e-01 | 100.0% | 88.4% |
| 3616203 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 54.0 | 4.89e-01 | 94.4% | 68.4% |
| 5064605 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.64 | 56.0 | 3.99e-01 | 100.0% | 73.5% |
| 4436943 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.64 | 58.0 | 5.58e-01 | 100.0% | 93.8% |
| 4618102 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.64 | 58.0 | 5.56e-01 | 100.0% | 95.0% |
| 4949396 | 606.1.1.0 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.63 | 44.0 | 4.13e-01 | 73.2% | 70.0% |
| 3643885 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 56.0 | 5.65e-01 | 100.0% | 100.0% |
| 4943538 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.63 | 55.0 | 3.42e-01 | 98.6% | 26.7% |
| 3786349 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.63 | 55.0 | 5.61e-01 | 98.6% | 100.0% |
| 3579249 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 51.0 | 4.82e-01 | 91.5% | 74.1% |
| 3625974 | 284.1.3.4 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK | 0.62 | 54.0 | 4.95e-01 | 94.4% | 87.8% |
| 3973396 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.61 | 51.0 | 4.69e-01 | 95.8% | 90.5% |
| 3657981 | 198.1.1.16 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › HTH_70 | 0.60 | 54.0 | 5.22e-01 | 100.0% | 88.7% |
| 4024628 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.60 | 41.0 | 4.14e-01 | 70.4% | 92.9% |
| 5028411 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 44.0 | 3.01e-01 | 80.3% | 99.6% |
| 5045968 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.59 | 51.0 | 3.13e-01 | 100.0% | 23.0% |
| 3596558 | 633.1.1.0 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain | 0.58 | 51.0 | 3.95e-01 | 97.2% | 61.9% |
| 1713371 | 633.28.1.1 ↗ | alpha bundles › Bromodomain-like › Tsi6 › Tsi6 › Tsi6 | 0.58 | 44.0 | 4.06e-01 | 83.1% | 86.5% |
| 3945104 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.58 | 50.0 | 3.58e-01 | 100.0% | 69.3% |
| 3518991 | 284.1.3.4 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK | 0.58 | 50.0 | 4.94e-01 | 98.6% | 100.0% |
| 4990614 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.56 | 48.0 | 3.27e-01 | 97.2% | 68.9% |
| 3831558 | 206.1.1.7 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase | 0.56 | 47.0 | 3.12e-01 | 100.0% | 59.1% |
| 3702110 | 593.1.1.0 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like | 0.56 | 49.0 | 3.38e-01 | 100.0% | 67.4% |
| 3936678 | 164.1.1.0 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II | 0.55 | 47.0 | 4.60e-01 | 95.8% | 90.0% |
| 3276944 | 604.12.1.2 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 | 0.55 | 42.0 | 4.21e-01 | 87.3% | 77.3% |
| 3990885 | 164.1.1.0 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II | 0.54 | 46.0 | 4.32e-01 | 97.2% | 83.3% |
| 3221764 | 603.2.1.0 ↗ | alpha bundles › STAT-like › STAT › STAT | 0.53 | 46.0 | 4.48e-01 | 94.4% | 85.0% |
| 4080313 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.53 | 44.0 | 3.60e-01 | 94.4% | 86.4% |
| 3168643 | 592.1.1.2 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › Helicase_PWI | 0.53 | 44.0 | 4.09e-01 | 95.8% | 83.2% |
| 3597971 | 4969.1.1.0 ↗ | alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I | 0.53 | 43.0 | 3.36e-01 | 97.2% | 78.3% |
| 4031434 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.53 | 43.0 | 4.04e-01 | 88.7% | 81.2% |
| 4478129 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.52 | 38.0 | 3.47e-01 | 74.6% | 72.2% |
| 3939577 | 7516.1.1.33 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › DUF273 | 0.50 | 40.0 | 2.92e-01 | 90.1% | 53.5% |