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KX889068.2__APC46119.1__vBVspPpVa5_0085__00084

Bact-Vir

KX889068.2__APC46119.1__vBVspPpVa5_0085__00084

Identity

Accession:
KX889068 ↗
Kingdom:
phage

Quality

87.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-59
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z0jB00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.88 66.0 6.73e-01 79.2% 90.2%
3a8pA02 6.10.140.680 Special › Helix non-globular › Helix Hairpins › 0.87 65.0 4.93e-01 79.2% 36.8%
4fvmA06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.87 65.0 6.78e-01 79.2% 87.5%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.86 65.0 5.75e-01 79.2% 57.5%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.85 62.0 4.94e-01 77.4% 44.0%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.84 63.0 5.49e-01 79.2% 75.3%
2a26B01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.84 61.0 6.63e-01 77.4% 97.7%
2rpaA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.83 68.0 5.95e-01 88.7% 77.9%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.82 60.0 5.27e-01 79.2% 77.2%
7k3zG01 3.50.7.10 Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL 0.82 73.0 4.76e-01 98.1% 50.2%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.81 60.0 4.59e-01 79.2% 39.0%
1owlA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.81 74.0 5.53e-01 100.0% 48.8%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.80 59.0 5.12e-01 79.2% 75.3%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.79 72.0 6.82e-01 98.1% 96.8%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.79 59.0 4.96e-01 81.1% 78.9%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.79 59.0 4.92e-01 81.1% 47.3%
3no6A00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.79 59.0 3.74e-01 79.2% 19.1%
1wrdA00 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 70.0 5.64e-01 98.1% 75.5%
2gw1A02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.78 62.0 3.71e-01 88.7% 12.8%
3cskA02 3.30.540.30 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › 0.77 60.0 4.14e-01 83.0% 31.5%
3vkgB03 1.20.58.1120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 0.77 67.0 4.77e-01 98.1% 50.6%
2au3A04 1.20.50.30 Mainly Alpha › Up-down Bundle › Pheromone ER-1 › 0.76 59.0 5.85e-01 88.7% 80.0%
1wfdA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.76 62.0 5.18e-01 90.6% 63.4%
4wzxA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.76 62.0 5.53e-01 90.6% 80.0%
4ewcA03 1.20.120.1660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.76 52.0 4.65e-01 83.0% 50.7%
5mmjn01 1.10.287.1480 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.76 54.0 4.48e-01 73.6% 43.8%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.75 65.0 5.34e-01 96.2% 66.0%
1u89A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.75 64.0 4.73e-01 96.2% 68.3%
8d7hD01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.75 69.0 4.69e-01 100.0% 57.2%
1v0dA01 6.10.140.170 Special › Helix non-globular › Helix Hairpins › 0.74 59.0 6.08e-01 98.1% 93.9%
3rm5B02 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.74 57.0 3.75e-01 84.9% 20.5%
4fxdA04 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.74 67.0 4.74e-01 100.0% 80.4%
3zciA00 1.20.58.1660 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 66.0 4.44e-01 100.0% 80.6%
3uumA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 63.0 4.82e-01 96.2% 73.8%
4o92A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.73 54.0 4.31e-01 79.2% 40.0%
2rkhA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.73 64.0 5.63e-01 96.2% 97.4%
2ib0A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.73 62.0 4.58e-01 94.3% 63.0%
1iurA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.73 61.0 5.90e-01 100.0% 95.2%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.73 55.0 5.27e-01 81.1% 80.0%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 61.0 4.95e-01 94.3% 83.2%
4cc9B00 1.20.5.4730 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.71 49.0 4.03e-01 73.6% 43.9%
1dd9A03 1.20.50.20 Mainly Alpha › Up-down Bundle › Pheromone ER-1 › DnaG, RNA polymerase domain, helical bundle 0.70 56.0 5.44e-01 88.7% 88.1%
4l8jA04 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.70 54.0 5.27e-01 84.9% 84.7%
4azcA02 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.68 48.0 4.71e-01 75.5% 67.8%
4yjwA00 1.20.120.930 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF12889, N-terminal DUF3829 0.67 48.0 3.53e-01 79.2% 28.1%
3bjdA01 1.10.1240.20 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain 0.67 58.0 4.95e-01 100.0% 65.9%
1dpsA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.67 57.0 4.14e-01 100.0% 57.2%
2wzkA01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.66 54.0 4.20e-01 96.2% 62.2%
1aueB00 1.20.120.150 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › FKBP12-rapamycin binding domain 0.64 45.0 3.87e-01 79.2% 47.9%
1q5zA00 1.10.4110.10 Mainly Alpha › Orthogonal Bundle › Invasion protein A fold › Salmonella invasion protein A, C-terminal actin-binding domain 0.62 47.0 3.61e-01 90.6% 73.1%
1sqpF00 1.10.1090.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain F › Cytochrome b-c1 complex subunit 7 0.61 50.0 3.93e-01 92.5% 44.8%
3qvmB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 43.0 2.81e-01 98.1% 35.0%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 45.0 4.15e-01 100.0% 76.8%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3258150 192.17.1.0 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.91 65.0 7.44e-01 77.4% 100.0%
4930292 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.88 67.0 5.97e-01 79.2% 81.4%
4944568 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.88 67.0 6.16e-01 79.2% 64.6%
3393443 192.29.1.164 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › RRP36 0.87 67.0 4.83e-01 81.1% 31.9%
4992256 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.87 75.0 5.87e-01 90.6% 78.8%
4154114 192.29.1.164 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › RRP36 0.87 65.0 4.76e-01 79.2% 33.1%
3253331 6132.1.1.0 alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain 0.87 66.0 5.98e-01 81.1% 61.4%
4983057 4163.1.1.0 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like 0.86 72.0 5.67e-01 88.7% 66.0%
4576287 3755.3.1.471 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Paralemmin 0.86 64.0 4.47e-01 79.2% 27.1%
3369775 5076.2.1.10 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › PF29520 0.85 64.0 3.90e-01 79.2% 14.7%
3550436 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.85 64.0 4.97e-01 79.2% 40.4%
3414767 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.85 72.0 6.15e-01 90.6% 75.0%
3763454 5086.1.1.87 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING 0.84 63.0 4.74e-01 79.2% 35.0%
3358885 604.12.1.8 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › KATNA1_MIT 0.84 72.0 6.14e-01 90.6% 75.0%
3965569 150.1.1.183 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Transposase_20 0.84 63.0 4.23e-01 79.2% 23.3%
5034282 4163.1.1.0 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like 0.84 71.0 5.25e-01 90.6% 53.6%
3770100 604.12.1.8 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › KATNA1_MIT 0.84 71.0 5.84e-01 90.6% 67.8%
4575627 2487.1.1.0 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.84 72.0 4.80e-01 92.5% 97.8%
3614078 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.84 62.0 4.70e-01 79.2% 35.0%
3503933 192.14.1.1 alpha bundles › Long alpha-hairpin › Siah interacting protein N terminal domain-like › Siah interacting protein N terminal domain-like › Siah-Interact_N 0.83 63.0 6.76e-01 84.9% 95.6%
4982026 150.1.1.209 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF7121 0.83 71.0 5.08e-01 92.5% 66.4%
3507780 604.12.1.8 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › KATNA1_MIT 0.81 69.0 5.77e-01 90.6% 70.6%
4618995 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.81 71.0 5.65e-01 94.3% 83.0%
4933335 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.81 67.0 5.82e-01 90.6% 72.5%
3847975 604.12.1.9 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT2 0.81 74.0 5.98e-01 100.0% 91.6%
57654 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.81 61.0 6.10e-01 81.1% 79.6%
3512636 3930.1.1.6 alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › Dicer_PBD 0.81 73.0 5.59e-01 100.0% 71.3%
4563317 192.7.1.3 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N 0.80 70.0 6.06e-01 96.2% 86.3%
3418094 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.80 67.0 5.77e-01 90.6% 73.8%
3610044 2487.1.1.0 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.80 70.0 4.74e-01 96.2% 53.5%
3655741 7542.1.1.0 a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain 0.80 71.0 5.31e-01 98.1% 79.2%
3793179 109.4.1.114 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1,Exportin-T 0.79 68.0 3.77e-01 92.5% 12.3%
3932069 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.79 67.0 5.95e-01 92.5% 76.0%
4976933 3930.1.1.0 alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase 0.79 72.0 5.25e-01 100.0% 45.2%
4034237 5055.1.1.0 extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel 0.79 67.0 5.15e-01 92.5% 56.5%
3660749 2487.1.1.0 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.79 70.0 5.18e-01 98.1% 76.2%
3925443 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.78 69.0 5.00e-01 98.1% 55.7%
4009705 639.2.1.0 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.78 66.0 6.33e-01 92.5% 100.0%
4090024 4246.1.1.2 a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.77 69.0 4.19e-01 100.0% 33.4%
5076876 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.77 63.0 5.51e-01 90.6% 73.8%
3990585 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.77 65.0 3.48e-01 92.5% 4.7%
4983638 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.76 66.0 6.10e-01 98.1% 76.8%
3209563 5076.1.1.0 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier 0.76 52.0 3.13e-01 71.7% 11.7%
4889091 4246.1.1.2 a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.76 66.0 3.95e-01 100.0% 34.1%
4969693 4266.2.1.2 alpha bundles › Hyaluronidase domain-like › TTHA0068-like › TTHA0068-like › Csm6_6H 0.76 61.0 4.85e-01 90.6% 44.8%
3934154 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.75 64.0 5.45e-01 94.3% 83.5%
4991094 150.1.1.3 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin 0.75 69.0 5.00e-01 100.0% 64.4%
4982123 150.1.1.3 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin 0.75 68.0 4.97e-01 100.0% 60.0%
3724315 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.74 58.0 4.16e-01 84.9% 30.7%
4962699 101.1.2.924 alpha arrays › HTH › HTH › winged helix domain › DUF7342 0.74 60.0 4.17e-01 92.5% 28.5%
4154511 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 63.0 4.32e-01 98.1% 33.5%
3596387 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.72 59.0 3.75e-01 92.5% 19.6%
3335640 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.72 58.0 5.50e-01 90.6% 81.5%
3602860 109.61.1.1 alpha superhelices › Repetitive alpha hairpins › Uncharacterized protein PF2048.1 › Uncharacterized protein PF2048.1 › MJ1579 0.72 63.0 5.75e-01 98.1% 85.7%
3236075 109.4.1.509 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRP12_HEAT 0.70 63.0 3.91e-01 100.0% 21.1%
3578163 3198.1.1.1 alpha bundles › ABA-1 repeat unit › ABA-1 repeat unit › ABA-1 repeat unit › NPA 0.69 58.0 4.55e-01 100.0% 72.0%
3513144 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 59.0 3.54e-01 100.0% 23.6%
3998101 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 52.0 3.86e-01 96.2% 34.0%