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KX905163.1__ARB07081.1__Semix9P1_phi38__00038

Bact-Vir

KX905163.1__ARB07081.1__Semix9P1_phi38__00038

Identity

Accession:
KX905163 ↗
Kingdom:
phage

Quality

83.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 134-232
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14285.12 best DUF4367 48.4 1.70e-12 100.0% 81.8%
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.79 73.0 5.99e-01 100.0% 82.4%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.77 66.0 5.81e-01 91.9% 84.0%
3v7bA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.74 69.0 5.94e-01 100.0% 73.5%
2p4bB02 3.30.200.100 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain 0.73 58.0 5.88e-01 100.0% 83.7%
3wa5B00 2.60.120.1690 Mainly Beta › Sandwich › Jelly Rolls › 0.72 67.0 6.18e-01 100.0% 81.5%
5cxwA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.71 64.0 4.25e-01 97.0% 92.0%
2olvA03 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.71 61.0 4.18e-01 91.9% 86.5%
3zg9B02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.70 62.0 4.17e-01 94.9% 95.5%
2lf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.70 51.0 4.12e-01 74.7% 74.9%
2bg1A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.70 60.0 4.16e-01 91.9% 91.7%
2c5wB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.70 62.0 4.13e-01 97.0% 90.9%
3udfA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.69 61.0 4.07e-01 94.9% 88.7%
3fwlA02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.69 60.0 4.00e-01 96.0% 83.7%
2v7sA00 3.30.2030.20 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.68 51.0 4.21e-01 77.8% 72.2%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.67 58.0 4.89e-01 93.9% 95.2%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.67 54.0 3.95e-01 84.8% 91.4%
2ldkA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.67 48.0 3.98e-01 75.8% 75.6%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.67 61.0 5.46e-01 100.0% 76.3%
1yprA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.65 56.0 5.19e-01 92.9% 91.2%
7zgmA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.65 57.0 4.31e-01 99.0% 93.0%
4iedA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.65 58.0 4.32e-01 98.0% 97.9%
5jmfA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.64 57.0 4.16e-01 100.0% 56.5%
1lf6A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.63 57.0 4.11e-01 99.0% 79.9%
1cqaA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.63 55.0 5.13e-01 94.9% 91.9%
6w0pB01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.63 57.0 4.08e-01 100.0% 85.8%
2l8oA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.62 39.0 3.51e-01 100.0% 43.8%
4qd4A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.62 52.0 3.60e-01 93.9% 97.8%
1nkgA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.61 42.0 3.12e-01 70.7% 89.6%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.60 55.0 5.02e-01 100.0% 92.2%
1skoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.57 49.0 4.65e-01 92.9% 92.2%
1g1bA00 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.57 46.0 3.92e-01 87.9% 73.8%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.57 48.0 4.64e-01 92.9% 98.2%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.57 45.0 4.08e-01 82.8% 74.2%
3bdrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 46.0 3.97e-01 87.9% 84.6%
2acaA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.56 44.0 3.63e-01 83.8% 95.4%
2htaA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 43.0 3.16e-01 84.8% 87.5%
5bulA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 45.0 3.07e-01 90.9% 92.9%
2c8mB00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 50.0 3.74e-01 100.0% 94.7%
2jmuA01 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.55 43.0 3.35e-01 83.8% 99.1%
2v4jB01 3.30.70.3340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 35.0 3.19e-01 81.8% 49.2%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 3.87e-01 88.9% 89.7%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 42.0 3.92e-01 85.9% 88.8%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 3.82e-01 88.9% 83.7%
2bolB02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 3.68e-01 81.8% 94.5%
8b6jb01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.52 39.0 3.12e-01 80.8% 44.9%
2ej8B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 37.0 3.38e-01 74.7% 82.4%
2w42B02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 46.0 3.52e-01 100.0% 74.5%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 42.0 3.76e-01 88.9% 86.2%
1ntvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 37.0 3.24e-01 77.8% 75.7%
6frlA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 42.0 2.76e-01 96.0% 82.5%
1z5hA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.50 36.0 3.01e-01 73.7% 44.1%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4951147 881.4.1.0 a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB 0.83 75.0 6.98e-01 100.0% 79.2%
3817626 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.83 77.0 6.18e-01 100.0% 76.7%
3283279 881.1.1.15 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3558 0.82 77.0 6.94e-01 100.0% 82.3%
3324335 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.82 77.0 6.27e-01 100.0% 78.2%
3959606 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.80 74.0 6.14e-01 100.0% 78.7%
3496493 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.79 46.0 3.70e-01 100.0% 31.7%
4950402 881.4.1.0 a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB 0.79 75.0 6.74e-01 100.0% 90.0%
5019858 881.4.1.2 a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › DUF4367 0.78 73.0 6.40e-01 100.0% 83.6%
3323226 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.76 71.0 6.08e-01 100.0% 96.0%
5020831 881.4.1.2 a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › DUF4367 0.76 72.0 6.57e-01 100.0% 83.2%
3955307 881.1.1.8 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PknH_C 0.75 69.0 5.67e-01 100.0% 86.8%
3952440 881.1.1.8 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PknH_C 0.75 70.0 5.74e-01 100.0% 85.8%
5010092 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.74 69.0 6.53e-01 100.0% 89.6%
4952518 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.72 64.0 6.16e-01 97.0% 84.5%
3602276 881.4.1.2 a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › DUF4367 0.72 67.0 5.96e-01 100.0% 72.6%
3282528 3844.2.1.1 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.72 53.0 3.99e-01 76.8% 60.1%
4955776 881.2.1.0 a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like 0.71 65.0 5.65e-01 100.0% 81.8%
4953129 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.71 66.0 6.25e-01 100.0% 88.7%
3487629 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 60.0 5.43e-01 93.9% 93.3%
4485300 223.3.1.14 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase, PF29195 0.69 61.0 4.34e-01 96.0% 80.0%
3593728 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 59.0 5.08e-01 91.9% 92.7%
4061397 223.3.1.3 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.69 60.0 4.49e-01 94.9% 95.8%
5015778 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.68 61.0 4.41e-01 96.0% 84.5%
3952435 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.68 62.0 5.11e-01 100.0% 84.8%
3711721 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.68 58.0 5.03e-01 91.9% 92.7%
3928306 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.68 59.0 5.22e-01 92.9% 87.8%
3258907 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.68 58.0 5.28e-01 91.9% 89.2%
4935741 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.68 63.0 5.94e-01 100.0% 85.2%
3229725 4019.1.1.1 alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.68 59.0 4.12e-01 98.0% 98.8%
3591534 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.67 60.0 5.54e-01 99.0% 77.6%
3209295 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.67 58.0 5.19e-01 92.9% 91.9%
7054 881.2.1.1 a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like › DUF3242 0.67 61.0 5.58e-01 100.0% 81.1%
3537449 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.66 57.0 5.19e-01 92.9% 92.2%
3289282 223.3.1.0 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins 0.66 58.0 3.97e-01 94.9% 85.4%
3266952 12.3.1.46 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.65 51.0 3.81e-01 82.8% 70.8%
3248645 12.3.1.13 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.65 57.0 4.12e-01 97.0% 62.5%
3390786 244.2.1.12 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › CFAP61_dimer 0.65 41.0 4.05e-01 71.7% 60.0%
5031971 12.3.1.74 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › GDE_N 0.63 57.0 4.12e-01 100.0% 91.5%
3252383 12.3.1.46 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.62 49.0 3.68e-01 83.8% 71.9%
3751112 223.2.1.29 a+b three layers › Profilin-like › profilin-like › profilin-like › DENND11 0.62 48.0 4.18e-01 82.8% 68.7%
3289478 4019.1.1.1 alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.59 53.0 3.62e-01 99.0% 97.1%
3708027 223.3.1.0 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins 0.59 53.0 4.25e-01 100.0% 89.2%
5046813 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 50.0 4.79e-01 92.9% 95.7%
4182580 223.2.1.33 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.58 50.0 4.60e-01 93.9% 90.0%
4999961 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 49.0 4.60e-01 92.9% 90.2%
2516680 4019.1.1.1 alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.58 50.0 3.41e-01 96.0% 89.1%
3628751 331.18.1.0 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc 0.57 46.0 3.67e-01 83.8% 67.0%
4978002 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 45.0 3.93e-01 83.8% 68.7%
3643744 5.1.4.122 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF295 0.57 39.0 2.85e-01 70.7% 25.9%
4557824 223.2.1.33 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.57 48.0 4.01e-01 90.9% 84.8%
2140453 223.2.1.12 a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.56 48.0 4.45e-01 92.9% 87.1%
5038289 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 44.0 3.93e-01 81.8% 71.1%
5079496 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 50.0 4.80e-01 98.0% 99.1%
3732152 331.1.1.5 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.55 35.0 3.87e-01 80.8% 81.2%
3838919 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.53 38.0 3.41e-01 74.7% 88.6%
5034682 12.3.1.74 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › GDE_N 0.53 47.0 3.67e-01 100.0% 95.9%
4946228 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 45.0 4.11e-01 100.0% 73.1%
3769483 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.52 43.0 3.97e-01 88.9% 87.2%
3556710 9.1.1.24 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.51 43.0 3.90e-01 88.9% 88.3%
D2 medium residues 58-114
PDB
Domain cluster: representative