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KX905163.1__ARB07084.1__Semix9P1_phi41__00041

Bact-Vir

KX905163.1__ARB07084.1__Semix9P1_phi41__00041

Identity

Accession:
KX905163 ↗
Kingdom:
phage

Quality

86.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-112
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8ek4A01 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.79 54.0 4.77e-01 70.2% 82.0%
2a2fX02 1.20.58.670 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D 0.75 61.0 5.49e-01 87.2% 72.9%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.74 53.0 5.74e-01 74.5% 97.4%
1owaA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 51.0 4.88e-01 70.2% 83.0%
4l8iB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.74 57.0 5.36e-01 81.9% 98.2%
1ldjA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.73 61.0 5.69e-01 90.4% 90.4%
2wzkA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.73 61.0 5.84e-01 90.4% 90.9%
2dq0A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.73 41.0 3.90e-01 73.4% 47.7%
7dl9A01 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.73 54.0 4.21e-01 77.7% 78.4%
2yfaB01 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.72 49.0 4.57e-01 71.3% 63.9%
1txuA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.71 53.0 5.37e-01 79.8% 81.9%
3fbzA01 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 45.0 4.42e-01 72.3% 64.7%
3lwjA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.66 56.0 4.49e-01 95.7% 56.5%
5haxA01 1.20.58.1780 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 55.0 4.06e-01 91.5% 81.5%
2n3eA01 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.65 55.0 5.14e-01 91.5% 90.4%
2dt7B01 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.65 40.0 4.85e-01 73.4% 100.0%
2genA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.64 55.0 4.43e-01 95.7% 57.4%
1vi0A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.64 54.0 4.75e-01 95.7% 78.6%
4me9B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.64 54.0 4.42e-01 96.8% 56.5%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.63 51.0 4.88e-01 86.2% 95.3%
1q6aA00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.63 54.0 5.25e-01 100.0% 84.1%
3vw4A01 1.10.340.50 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.63 48.0 4.89e-01 80.9% 82.6%
1t98A02 1.20.58.590 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain 0.63 51.0 4.29e-01 89.4% 89.0%
3cjdA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 51.0 4.16e-01 91.5% 54.4%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.61 49.0 4.72e-01 87.2% 95.3%
2d2mD00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.61 46.0 4.00e-01 79.8% 90.3%
3b81A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 52.0 4.24e-01 96.8% 53.6%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 48.0 4.13e-01 86.2% 90.6%
1vctA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.60 47.0 4.55e-01 86.2% 98.2%
2pfdA03 1.20.120.680 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle 0.60 48.0 3.83e-01 90.4% 83.7%
1x3kA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 47.0 4.12e-01 92.6% 55.8%
1rz4A01 1.25.40.250 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat; domain 1 0.59 44.0 4.13e-01 94.7% 63.3%
1urvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 50.0 4.25e-01 94.7% 59.1%
1cqxA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 50.0 4.33e-01 96.8% 82.7%
1elwA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 37.0 3.52e-01 78.7% 53.0%
1o0sA02 1.20.1370.30 Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › 0.57 43.0 4.12e-01 81.9% 68.5%
6wk3A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 50.0 4.41e-01 98.9% 65.5%
3hyuA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 48.0 4.19e-01 91.5% 83.7%
7w5gA01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.56 49.0 3.31e-01 96.8% 38.9%
5xtck00 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 42.0 4.16e-01 97.9% 76.3%
7csoA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.56 48.0 3.74e-01 97.9% 84.1%
4aciA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 45.0 3.75e-01 90.4% 64.2%
1binA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 43.0 3.83e-01 87.2% 90.9%
1gcvB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 44.0 3.96e-01 89.4% 86.8%
1b68A00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.54 42.0 3.75e-01 85.1% 79.0%
1oj6A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 44.0 3.86e-01 91.5% 93.2%
6bmeA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 45.0 4.10e-01 93.6% 85.0%
6h2dS01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.53 39.0 3.00e-01 76.6% 83.9%
7ep3A01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.53 45.0 3.46e-01 98.9% 85.4%
4o8sA02 1.20.58.1790 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › JHP933, helical tail domain 0.53 44.0 4.24e-01 100.0% 82.2%
1sj7C00 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.52 43.0 3.58e-01 90.4% 63.3%
1oshA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.52 44.0 3.40e-01 93.6% 93.5%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.52 41.0 3.93e-01 88.3% 79.8%
1yowA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.52 45.0 3.40e-01 96.8% 98.7%
3ggyA00 1.20.1260.60 Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1 0.51 45.0 3.67e-01 100.0% 82.3%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 42.0 3.77e-01 92.6% 91.4%
2ot4A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.51 40.0 3.89e-01 86.2% 89.7%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4839189 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.85 70.0 6.31e-01 86.2% 69.7%
4096580 1188.1.1.3 alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › Mntp 0.73 56.0 4.40e-01 80.9% 82.0%
3925681 633.24.1.2 alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF5601 0.72 50.0 5.12e-01 71.3% 82.2%
4933622 604.5.1.2 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.71 48.0 4.77e-01 70.2% 84.0%
2642872 592.3.1.1 alpha arrays › PWI domain-like › N-terminal domain of egg case silk protein TuSp1 › N-terminal domain of egg case silk protein TuSp1 › Spidroin_N 0.70 62.0 5.39e-01 96.8% 84.5%
4628281 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.69 52.0 5.34e-01 79.8% 92.2%
3929109 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.68 47.0 4.48e-01 71.3% 77.3%
3930618 601.1.2.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.68 47.0 4.09e-01 71.3% 84.3%
3827460 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.68 50.0 4.17e-01 77.7% 66.7%
5032048 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.67 51.0 4.02e-01 79.8% 80.0%
3174287 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.66 45.0 3.61e-01 70.2% 89.2%
3279228 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.65 53.0 4.11e-01 88.3% 79.5%
3813578 1188.1.1.1 alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › Zip 0.65 58.0 4.20e-01 100.0% 56.2%
4963637 5069.1.2.6 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Respiratory nitrate reductase 1 gamma chain › PF26448 0.64 56.0 4.64e-01 96.8% 60.6%
3530376 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.64 46.0 4.66e-01 76.6% 89.5%
3254483 3758.1.1.0 alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins 0.63 46.0 3.45e-01 75.5% 61.1%
5021244 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.63 48.0 3.85e-01 79.8% 78.4%
3601936 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.63 47.0 4.16e-01 79.8% 90.0%
3518542 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.63 57.0 4.58e-01 100.0% 67.2%
3606790 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.63 50.0 5.18e-01 89.4% 91.1%
4818764 601.24.1.1 alpha bundles › Four-helical up-and-down bundle › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) › FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) › FRB_dom 0.61 45.0 4.33e-01 77.7% 74.5%
5013061 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.60 42.0 2.74e-01 72.3% 19.5%
3268013 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 49.0 3.92e-01 93.6% 43.5%
5057844 180.1.1.1 alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.59 52.0 4.78e-01 98.9% 83.2%
3728216 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.59 46.0 3.06e-01 86.2% 55.4%
51190 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.59 50.0 4.30e-01 94.7% 59.1%
3805763 7015.1.1.0 alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.59 45.0 3.80e-01 79.8% 62.0%
3623181 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.59 49.0 4.06e-01 91.5% 86.1%
3292 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.58 50.0 4.33e-01 96.8% 82.7%
3699782 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.58 40.0 3.94e-01 71.3% 86.0%
3176307 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.58 47.0 4.14e-01 89.4% 87.9%
3219325 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.57 48.0 4.06e-01 91.5% 83.5%
4278611 604.12.1.15 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Mito_morph_reg 0.56 47.0 4.23e-01 90.4% 87.7%
157647 133.2.1.1 alpha bundles › DH domain-like › Methenyltetrahydrofolate cyclohydrolase-like › Methenyltetrahydrofolate cyclohydrolase-like › FTCD_C 0.56 50.0 3.87e-01 100.0% 87.3%
4458494 3684.1.1.23 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › CA109-like 0.56 41.0 3.41e-01 77.7% 94.9%
3787899 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.56 47.0 4.12e-01 92.6% 91.4%
4196397 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.56 45.0 4.01e-01 89.4% 85.7%
4871777 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.55 45.0 3.92e-01 90.4% 92.6%
3286 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.54 44.0 3.96e-01 89.4% 86.8%
5018948 604.5.1.2 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.53 46.0 4.44e-01 97.9% 89.1%
144613 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.53 41.0 3.74e-01 85.1% 87.8%
4371230 2004.1.1.615 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_23, AAA_29 0.52 43.0 2.59e-01 91.5% 65.3%
3424864 633.22.1.0 alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) 0.52 41.0 3.45e-01 87.2% 55.3%
3966676 109.32.1.0 alpha superhelices › Repetitive alpha hairpins › Alkylsulfatase SdsA1 linker domain › Alkylsulfatase SdsA1 linker domain 0.51 33.0 3.33e-01 85.1% 61.0%
4272313 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.51 43.0 3.81e-01 94.7% 84.6%