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KX905163.1__ARB07114.1__Semix9P1_phi71__00071

Bact-Vir

KX905163.1__ARB07114.1__Semix9P1_phi71__00071

Identity

Accession:
KX905163 ↗
Kingdom:
phage

Quality

78.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 102-174
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 50.0 4.72e-01 100.0% 60.2%
4ragA02 1.10.10.430 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphatase 2C, C-terminal domain suprefamily 0.69 47.0 4.86e-01 95.9% 76.5%
4mtdD01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 50.0 4.72e-01 98.6% 65.9%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 45.0 4.18e-01 98.6% 54.8%
5y6iA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 46.0 4.70e-01 98.6% 72.6%
5bpdD01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 44.0 4.44e-01 100.0% 68.0%
1xmkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 44.0 4.37e-01 100.0% 67.1%
2kvcA01 1.10.150.430 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF3349, helical bundle 0.63 44.0 4.14e-01 82.2% 60.2%
1stzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 48.0 4.56e-01 100.0% 69.4%
2l4mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 40.0 4.18e-01 100.0% 73.9%
3rgoA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.60 40.0 3.19e-01 97.3% 32.5%
6qv3A05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 52.0 4.80e-01 100.0% 86.0%
3bjoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 3.95e-01 86.3% 86.4%
2af7D00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.55 42.0 3.59e-01 100.0% 49.6%
6izcA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 47.0 3.27e-01 100.0% 54.4%
1z3xA02 1.10.10.1770 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Gun4-like 0.55 41.0 4.12e-01 80.8% 94.7%
3cuqB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 4.25e-01 91.8% 87.0%
5tjjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 4.13e-01 90.4% 80.8%
3j7aY00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 3.51e-01 98.6% 42.9%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.54 39.0 4.21e-01 100.0% 100.0%
3v3sA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 47.0 3.25e-01 100.0% 53.9%
4wcgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 4.05e-01 89.0% 91.8%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 3.61e-01 78.1% 75.3%
4kmfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 4.08e-01 89.0% 91.9%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.52 32.0 3.56e-01 72.6% 80.7%
2qvoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.48e-01 98.6% 63.2%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 36.0 3.41e-01 78.1% 75.3%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3987818 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.86 76.0 6.40e-01 94.5% 76.5%
3402581 101.1.1.96 alpha arrays › HTH › HTH › Three-helical HTH › Neugrin 0.75 43.0 4.46e-01 75.3% 60.0%
5047649 101.1.9.36 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.70 37.0 4.33e-01 84.9% 74.0%
3384684 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 55.0 5.26e-01 100.0% 74.1%
4945088 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 46.0 4.32e-01 100.0% 61.1%
4932995 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.65 34.0 3.94e-01 86.3% 72.0%
4518241 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.63 35.0 3.55e-01 90.4% 52.0%
4855518 101.1.2.9 alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV 0.63 46.0 3.45e-01 76.7% 46.1%
4468068 101.1.2.46 alpha arrays › HTH › HTH › winged helix domain › HrcA_DNA-bdg 0.62 47.0 4.26e-01 100.0% 59.0%
4501841 101.1.2.280 alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.62 44.0 4.31e-01 98.6% 68.8%
3937711 3818.1.1.1 alpha arrays › PHAX RNA-binding domain › PHAX RNA-binding domain › PHAX RNA-binding domain › PHAX_RNA-bd 0.61 37.0 3.43e-01 82.2% 47.4%
5062336 4016.1.1.1 alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › DNA_topoisoIV 0.58 41.0 3.23e-01 75.3% 49.7%
3838276 101.1.2.19 alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.56 47.0 3.48e-01 100.0% 35.8%
4945179 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 48.0 3.87e-01 100.0% 55.2%
5005264 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 47.0 3.66e-01 98.6% 47.3%
4374756 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.54 40.0 3.82e-01 79.5% 78.8%
5065568 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 47.0 3.92e-01 100.0% 57.7%
3449129 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 41.0 3.82e-01 100.0% 66.3%
4234747 4203.1.1.1 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.53 35.0 3.77e-01 89.0% 84.5%
3267186 4203.1.1.1 few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.52 35.0 3.38e-01 84.9% 60.0%
4440636 4959.1.1.1 a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.52 37.0 3.01e-01 75.3% 87.1%
3943470 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.52 38.0 3.69e-01 91.8% 69.4%
5011299 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 42.0 3.69e-01 98.6% 60.9%
3819311 101.1.2.516 alpha arrays › HTH › HTH › winged helix domain › PF25895 0.51 43.0 3.69e-01 98.6% 64.8%
5057173 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.50 40.0 3.05e-01 97.3% 35.6%
D2 medium residues 14-93
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k66A01 1.20.120.770 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain 0.86 79.0 5.71e-01 100.0% 45.5%
3nyjA00 1.20.120.770 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain 0.80 73.0 5.53e-01 100.0% 48.6%
3fd9A03 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.71 56.0 5.88e-01 85.0% 93.2%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.70 54.0 5.75e-01 86.3% 100.0%
2az0B00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.69 53.0 5.64e-01 86.3% 91.5%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 49.0 5.39e-01 73.8% 100.0%
3itfA00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.69 53.0 4.81e-01 91.3% 61.3%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.67 54.0 5.47e-01 88.7% 93.7%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.67 55.0 5.59e-01 88.7% 97.4%
6q45G01 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.66 54.0 4.47e-01 91.3% 74.7%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.65 49.0 5.23e-01 87.5% 98.5%
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.64 58.0 5.81e-01 100.0% 98.8%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.63 48.0 4.97e-01 83.7% 90.7%
3b2eF00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.63 46.0 5.04e-01 78.8% 100.0%
3m7gA02 1.10.8.1010 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 46.0 4.38e-01 81.2% 67.4%
1dkxA02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 41.0 4.15e-01 73.8% 77.5%
2oduA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 48.0 4.42e-01 90.0% 70.5%
1grjA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.57 43.0 4.53e-01 92.5% 87.8%
1wn0A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.57 46.0 3.95e-01 88.7% 75.6%
4g6dB02 6.10.140.1800 Special › Helix non-globular › Helix Hairpins › 0.56 45.0 4.53e-01 90.0% 100.0%
3zxsA04 1.10.10.1710 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Deoxyribodipyrimidine photolyase-related 0.53 35.0 3.77e-01 97.5% 78.6%
7craA02 1.20.58.1480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 37.0 3.55e-01 76.2% 85.9%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3409567 3755.3.1.324 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF725 0.79 71.0 5.58e-01 100.0% 64.8%
3965106 605.1.1.4 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.75 61.0 6.31e-01 87.5% 98.7%
5046748 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.74 57.0 6.00e-01 88.7% 92.9%
4036888 1075.4.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.73 64.0 4.17e-01 95.0% 23.3%
3353940 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.73 61.0 6.11e-01 100.0% 88.7%
3206128 3567.1.1.139 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › PF29055 0.72 64.0 5.65e-01 97.5% 85.2%
3386352 4207.1.1.104 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › Bac_export_2 0.72 64.0 5.78e-01 100.0% 72.7%
3796505 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.72 63.0 5.99e-01 97.5% 85.3%
3317016 150.5.1.102 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › PF28483 0.71 56.0 5.96e-01 88.7% 100.0%
3249830 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.71 62.0 5.40e-01 100.0% 65.6%
3992452 150.5.1.74 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › CUX1_N 0.71 61.0 6.14e-01 97.5% 96.2%
3615973 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.69 59.0 5.27e-01 95.0% 77.4%
222991 192.10.1.1 alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain › DksA_N 0.68 55.0 5.25e-01 92.5% 75.0%
5028558 5058.1.1.2 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st 0.68 54.0 4.99e-01 86.3% 67.0%
3960783 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.68 53.0 5.34e-01 100.0% 81.2%
3424102 604.30.1.1 alpha bundles › Spectrin repeat-like › Gamma-secretase subunit PEN-2 › Gamma-secretase subunit PEN-2 › PEN-2 0.68 47.0 4.33e-01 72.5% 55.2%
3699295 5086.1.1.158 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Sec5 0.67 60.0 5.11e-01 100.0% 63.1%
4110261 3748.1.1.2 extended segments › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › CSN5_C 0.67 57.0 5.68e-01 100.0% 90.6%
3980029 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.67 57.0 3.84e-01 96.2% 24.8%
3907712 5086.1.1.150 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › LUC7 0.67 53.0 5.49e-01 88.7% 97.3%
5041271 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.66 53.0 5.52e-01 85.0% 94.7%
3677185 4992.1.1.27 extended segments › RelB-like › RelB-like › RelB-like › Ist1 0.65 54.0 5.19e-01 91.3% 82.2%
3201381 192.8.1.139 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Fung_rhodopsin 0.65 49.0 5.04e-01 83.7% 88.0%
4010395 622.4.1.26 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › HisKA 0.65 48.0 5.13e-01 87.5% 88.6%
4853348 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.65 53.0 5.20e-01 91.3% 87.1%
4951492 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.64 49.0 5.33e-01 82.5% 100.0%
3973453 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.64 53.0 5.36e-01 90.0% 90.0%
3982421 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.64 50.0 5.19e-01 82.5% 89.3%
3487862 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.62 53.0 3.80e-01 95.0% 87.1%
4287749 150.5.1.110 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › PRESAN 0.59 49.0 4.73e-01 92.5% 82.2%
5034052 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.57 46.0 4.92e-01 87.5% 100.0%