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KX912252.1__AVM33036.1__X__00040
Bact-VirKX912252.1__AVM33036.1__X__00040
Identity
- Accession:
- KX912252 ↗
- Kingdom:
- phage
Quality
79.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-167
Domain cluster:
rep: IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015305__D84-207
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gjwC01 | 3.40.1350.150 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.69 | 35.0 | 3.71e-01 | 91.9% | 55.0% |
| 1knvB00 | 3.40.91.10 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.69 | 57.0 | 4.61e-01 | 87.0% | 72.5% |
| 1r0vA01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.68 | 32.0 | 4.43e-01 | 87.6% | 90.9% |
| 1cfrA00 | 3.40.91.10 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.67 | 56.0 | 4.56e-01 | 87.0% | 74.9% |
| 3ib5A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.65 | 54.0 | 4.19e-01 | 88.2% | 69.0% |
| 2ewfA03 | 3.40.91.50 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.65 | 56.0 | 4.96e-01 | 91.3% | 75.1% |
| 3dvoA00 | 3.40.91.10 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.65 | 53.0 | 4.17e-01 | 87.0% | 66.8% |
| 4hn3A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.64 | 53.0 | 4.19e-01 | 88.2% | 70.5% |
| 3bioA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.64 | 32.0 | 3.71e-01 | 72.7% | 64.9% |
| 4zkfA01 | 3.60.10.10 | Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase | 0.61 | 50.0 | 3.98e-01 | 87.6% | 90.6% |
| 1ccwB01 | 3.20.20.240 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Methylmalonyl-CoA mutase | 0.61 | 54.0 | 3.97e-01 | 95.0% | 66.2% |
| 1mdbA02 | 3.40.50.980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 43.0 | 4.18e-01 | 89.4% | 67.8% |
| 1egaA02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.59 | 38.0 | 4.50e-01 | 73.9% | 97.2% |
| 1amuA02 | 3.40.50.980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 40.0 | 4.27e-01 | 91.3% | 80.7% |
| 3ieyB00 | 3.40.1350.150 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.57 | 35.0 | 3.64e-01 | 91.9% | 63.2% |
| 1fcqA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.56 | 45.0 | 3.63e-01 | 85.1% | 85.7% |
| 3iteB01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.55 | 39.0 | 2.96e-01 | 93.2% | 28.4% |
| 3s6dA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.55 | 46.0 | 3.88e-01 | 88.8% | 95.2% |
| 4impA02 | 3.40.50.11460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 46.0 | 4.22e-01 | 90.1% | 81.0% |
| 6lpmA00 | 3.60.10.10 | Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase | 0.54 | 43.0 | 3.81e-01 | 85.1% | 83.1% |
| 3gbvA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 37.0 | 3.91e-01 | 90.7% | 75.8% |
| 7c79I01 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.54 | 40.0 | 3.50e-01 | 76.4% | 51.5% |
| 1otgA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.54 | 37.0 | 4.15e-01 | 81.4% | 91.2% |
| 4m1aA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.53 | 34.0 | 4.11e-01 | 82.0% | 98.1% |
| 3n2qA02 | 3.30.300.190 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.53 | 37.0 | 4.23e-01 | 73.3% | 98.3% |
| 4l4qA02 | 3.30.300.340 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › S-adenosylmethionine synthetase, N-terminal domain | 0.52 | 37.0 | 4.06e-01 | 71.4% | 91.3% |
| 1srqC02 | 3.40.50.11210 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Rap/Ran-GAP | 0.52 | 37.0 | 3.62e-01 | 90.1% | 64.7% |
| 6z9uA01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.52 | 27.0 | 3.57e-01 | 87.6% | 94.0% |
| 2gerA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 43.0 | 4.26e-01 | 90.1% | 91.9% |
| 5kc8A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 37.0 | 3.76e-01 | 90.7% | 75.3% |
| 1j33A02 | 3.40.50.10210 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (CobT), large domain | 0.50 | 41.0 | 3.45e-01 | 87.0% | 92.7% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5057713 | 2008.1.1.107 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD | 0.76 | 53.0 | 5.96e-01 | 87.6% | 89.8% |
| 4960251 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.75 | 51.0 | 5.66e-01 | 87.0% | 85.0% |
| 4944782 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.74 | 55.0 | 5.76e-01 | 86.3% | 83.3% |
| 4946872 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.71 | 60.0 | 5.95e-01 | 87.6% | 88.5% |
| 4960131 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.71 | 59.0 | 5.13e-01 | 87.0% | 71.9% |
| 4991375 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.70 | 49.0 | 5.68e-01 | 78.3% | 99.1% |
| 3466135 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.69 | 57.0 | 5.39e-01 | 85.1% | 76.2% |
| 4931728 | 2008.1.1.212 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27326 | 0.69 | 58.0 | 5.74e-01 | 89.4% | 84.1% |
| 4409039 | 2008.1.1.207 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_7 | 0.69 | 57.0 | 5.11e-01 | 87.0% | 86.8% |
| 3312804 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.69 | 55.0 | 5.13e-01 | 83.9% | 75.9% |
| 4934859 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.68 | 50.0 | 3.67e-01 | 75.8% | 85.6% |
| 5043632 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.67 | 51.0 | 4.77e-01 | 89.4% | 65.5% |
| 4965212 | 2008.1.1.233 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF26226 | 0.66 | 55.0 | 5.55e-01 | 87.6% | 93.1% |
| None | — | 0.66 | 54.0 | 5.02e-01 | 88.8% | 70.3% | |
| 5049100 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.63 | 51.0 | 4.96e-01 | 85.1% | 77.8% |
| 4936198 | 2008.1.1.78 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_endonuc | 0.62 | 41.0 | 4.61e-01 | 87.0% | 86.2% |
| 3842532 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.62 | 47.0 | 5.03e-01 | 87.0% | 90.7% |
| 4967062 | 2008.1.1.222 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NotI | 0.62 | 55.0 | 4.92e-01 | 96.3% | 72.9% |
| 3753158 | 2007.9.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain | 0.61 | 47.0 | 4.92e-01 | 87.0% | 86.0% |
| 3715687 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.61 | 50.0 | 4.19e-01 | 86.3% | 85.9% |
| 5014112 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.61 | 36.0 | 4.60e-01 | 73.9% | 100.0% |
| 3176440 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.60 | 38.0 | 4.55e-01 | 70.8% | 95.2% |
| 5029779 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.60 | 34.0 | 3.87e-01 | 73.9% | 72.5% |
| 3928103 | 246.3.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like | 0.60 | 49.0 | 3.65e-01 | 87.6% | 83.0% |
| 3225023 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.60 | 36.0 | 4.41e-01 | 71.4% | 91.4% |
| 4622636 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.60 | 33.0 | 4.23e-01 | 70.2% | 94.4% |
| 4676615 | 2008.1.1.85 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_TdeIII | 0.60 | 48.0 | 3.99e-01 | 84.5% | 69.1% |
| 3593536 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.59 | 44.0 | 4.35e-01 | 85.7% | 72.0% |
| 3371640 | 2003.1.5.156 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_31 | 0.59 | 42.0 | 2.94e-01 | 72.7% | 53.9% |
| 3833447 | 2003.1.5.174 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_15 | 0.58 | 41.0 | 2.90e-01 | 73.3% | 33.1% |
| 4986386 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.58 | 35.0 | 3.72e-01 | 72.0% | 66.2% |
| 3391348 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.58 | 42.0 | 4.19e-01 | 91.3% | 71.8% |
| 5013853 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.57 | 37.0 | 4.48e-01 | 72.7% | 100.0% |
| 1560740 | 2008.1.1.65 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › L_protein_N | 0.57 | 43.0 | 3.59e-01 | 82.0% | 46.8% |
| 4060254 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.57 | 48.0 | 4.07e-01 | 88.2% | 62.0% |
| 3624992 | 2496.1.1.1 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › CRAL_TRIO | 0.56 | 40.0 | 3.69e-01 | 71.4% | 70.2% |
| 3252017 | 2004.1.1.164 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc | 0.56 | 46.0 | 4.26e-01 | 87.0% | 83.9% |
| 223513 | 315.1.1.3 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › CHMI | 0.56 | 39.0 | 4.36e-01 | 81.4% | 90.6% |
| 3739775 | 2003.1.7.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › 5-FTHF_cyc-lig | 0.54 | 45.0 | 4.21e-01 | 88.8% | 76.4% |
| 4490768 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 44.0 | 2.62e-01 | 87.6% | 13.0% |
| None | — | 0.53 | 44.0 | 2.60e-01 | 88.2% | 12.6% | |
| 3187463 | 7575.1.1.0 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like | 0.53 | 44.0 | 3.90e-01 | 89.4% | 89.4% |
| 3488846 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 43.0 | 3.66e-01 | 87.0% | 84.2% |
| 3500581 | 2002.1.1.30 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 | 0.52 | 41.0 | 3.44e-01 | 84.5% | 74.1% |
| 3393681 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.52 | 43.0 | 3.56e-01 | 89.4% | 77.6% |
| 3833696 | 2005.1.1.43 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_2nd | 0.51 | 36.0 | 3.50e-01 | 72.0% | 69.7% |
| 4995334 | 2011.2.1.7 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 | 0.50 | 41.0 | 3.59e-01 | 87.0% | 75.5% |