←Back to structures
KX925554.1__APC46357.1__X__00095
Bact-VirKX925554.1__APC46357.1__X__00095
Identity
- Accession:
- KX925554 ↗
- Kingdom:
- phage
Quality
69.4
mean pLDDT
Taxonomy
TaxID: 1913591
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-50
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6s8zA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 51.0 | 4.56e-01 | 88.6% | 56.5% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 49.0 | 4.41e-01 | 88.6% | 55.6% |
| 2ahmH02 | 3.30.70.3540 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nsp8 replicase, head domain | 0.64 | 51.0 | 4.02e-01 | 88.6% | 51.6% |
| 3ub0A02 | 3.30.70.3540 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nsp8 replicase, head domain | 0.64 | 51.0 | 4.00e-01 | 88.6% | 52.2% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 46.0 | 4.09e-01 | 88.6% | 52.2% |
| 6r2wH02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.62 | 48.0 | 3.57e-01 | 84.1% | 42.7% |
| 1iyjB02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.62 | 47.0 | 3.64e-01 | 90.9% | 74.6% |
| 2lvlA01 | 2.170.150.60 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › | 0.61 | 51.0 | 3.80e-01 | 95.5% | 89.4% |
| 2fhdA02 | 2.30.30.810 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 44.0 | 3.89e-01 | 86.4% | 66.7% |
| 2kl5A00 | 3.50.4.20 | Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Uncharacterised protein DUF1027 | 0.59 | 47.0 | 3.60e-01 | 90.9% | 83.6% |
| 2iw3A05 | 2.40.50.990 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 47.0 | 3.67e-01 | 100.0% | 38.5% |
| 1vwxZ00 | 2.30.30.770 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 51.0 | 3.63e-01 | 100.0% | 87.4% |
| 1a31A02 | 2.170.11.10 | Mainly Beta › Beta Complex › DNA Topoisomerase I; domain 2 › DNA Topoisomerase I, domain 2 | 0.57 | 41.0 | 3.20e-01 | 81.8% | 82.9% |
| 4qrlA00 | 2.40.128.280 | Mainly Beta › Beta Barrel › Lipocalin › | 0.56 | 38.0 | 2.99e-01 | 75.0% | 61.8% |
| 3jxvA02 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.54 | 41.0 | 3.11e-01 | 88.6% | 90.9% |
| 5dnoA00 | 3.10.590.10 | Alpha Beta › Roll › ph1033 like fold › ph1033 like domains | 0.54 | 44.0 | 3.00e-01 | 90.9% | 50.6% |
| 3wx7A02 | 2.10.10.90 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.53 | 46.0 | 3.59e-01 | 97.7% | 52.6% |
| 3pufL00 | 2.40.128.680 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 41.0 | 3.01e-01 | 88.6% | 39.7% |
| 3kioC01 | 2.40.128.680 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 41.0 | 3.18e-01 | 88.6% | 51.6% |
| 2ljwA00 | 3.30.428.40 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Protein of unknown function DUF3067 | 0.50 | 41.0 | 3.19e-01 | 95.5% | 74.0% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4667660 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.73 | 49.0 | 2.93e-01 | 88.6% | 10.0% |
| 2605331 | 4315.1.1.1 ↗ | beta barrels › Coronavirus NSP8-like › Coronavirus NSP8-like › Coronavirus NSP8-like › CoV_NSP8 | 0.65 | 52.0 | 3.72e-01 | 88.6% | 38.1% |
| 3256514 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 53.0 | 4.38e-01 | 88.6% | 54.7% |
| 3108982 | 4315.1.1.1 ↗ | beta barrels › Coronavirus NSP8-like › Coronavirus NSP8-like › Coronavirus NSP8-like › CoV_NSP8 | 0.63 | 51.0 | 3.32e-01 | 88.6% | 26.1% |
| 1694867 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.58 | 46.0 | 4.32e-01 | 90.9% | 71.7% |
| 3519227 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.57 | 34.0 | 3.56e-01 | 88.6% | 65.0% |
| 4633748 | 3613.1.1.1 ↗ | beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Clp1 | 0.56 | 44.0 | 3.16e-01 | 86.4% | 34.2% |
| 4149799 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.55 | 43.0 | 4.18e-01 | 88.6% | 78.0% |
| 3519884 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.53 | 43.0 | 3.46e-01 | 100.0% | 78.0% |
| 3501834 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 39.0 | 3.42e-01 | 93.2% | 52.9% |
| 3926950 | 4.1.1.214 ↗ | beta barrels › SH3 › SH3 › SH3 › GCN5L1 | 0.53 | 41.0 | 3.25e-01 | 100.0% | 37.5% |