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KX925554.1__APC46388.1__X__00126

Bact-Vir

KX925554.1__APC46388.1__X__00126

Identity

Accession:
KX925554 ↗
Kingdom:
phage

Quality

79.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Borockvirus› Streptomyces_phage_BRock

TaxID: 1913591

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 307-435
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02839.20 best CBM_5_12 28.5 1.70e-06 33.3% 68.2%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wvvB01 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.89 34.0 5.84e-01 77.5% 100.0%
1goiB03 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.84 33.0 5.40e-01 78.3% 96.1%
2rtsA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.79 34.0 4.55e-01 80.6% 74.0%
1aiwA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.66 30.0 4.35e-01 77.5% 91.9%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5026481 64.3.1.3 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 0.87 34.0 5.64e-01 79.1% 98.0%
2389402 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.84 33.0 5.23e-01 78.3% 90.7%
1291025 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.79 34.0 4.55e-01 80.6% 74.0%
3976685 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.79 33.0 5.34e-01 76.0% 100.0%
3972100 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.77 36.0 5.13e-01 81.4% 90.8%
4009008 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.75 32.0 5.12e-01 75.2% 100.0%
4307941 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.73 33.0 5.10e-01 75.2% 100.0%
3344136 12.1.1.74 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › MATH_2 0.62 32.0 3.59e-01 94.6% 62.0%
D2 medium residues 623-787
PDB
Domain cluster: rep: MK919470.1__QDH47709.1__SEA_MELLIE_30__00030__D88-270
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.74 69.0 6.48e-01 100.0% 85.9%
7erlA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.74 69.0 6.71e-01 99.4% 95.0%
4ozxA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.74 69.0 5.65e-01 100.0% 90.9%
4ccdA03 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.73 69.0 6.44e-01 99.4% 92.0%
1yrzA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.73 69.0 6.34e-01 100.0% 87.3%
3vv1A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.73 56.0 6.05e-01 100.0% 92.9%
1ux6A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.73 69.0 6.27e-01 98.8% 92.3%
1y7bA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.73 67.0 6.16e-01 98.8% 91.9%
4qt6A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.72 60.0 6.14e-01 98.8% 90.6%
3tojA01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.72 62.0 6.12e-01 97.6% 86.6%
7b2sA01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.71 61.0 6.30e-01 98.8% 95.5%
2durB01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.70 66.0 5.84e-01 100.0% 82.1%
5dzeA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.70 64.0 5.97e-01 98.2% 80.9%
4ym3C00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.70 54.0 5.83e-01 97.6% 94.3%
1vavA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.70 64.0 5.79e-01 99.4% 89.6%
1uaiA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.69 64.0 5.78e-01 100.0% 85.7%
2wkkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.69 52.0 5.44e-01 97.6% 85.3%
8b55A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.68 53.0 5.19e-01 85.5% 74.9%
1umzA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.67 63.0 5.27e-01 99.4% 62.2%
1ms5B02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.66 62.0 5.30e-01 100.0% 65.9%
4wvmA04 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.65 60.0 5.68e-01 98.2% 84.5%
5mc9A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 52.0 5.07e-01 86.7% 81.3%
8a7dC01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 52.0 4.70e-01 86.1% 71.3%
3pvnA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 51.0 4.78e-01 99.4% 72.8%
1f1sA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.60 29.0 4.05e-01 86.1% 92.7%
3ugfB02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.60 55.0 5.40e-01 98.2% 91.0%
3f95B00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.58 48.0 4.76e-01 99.4% 82.7%
2v72A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 40.0 4.36e-01 98.8% 85.4%
3qcwA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 51.0 4.86e-01 98.2% 82.1%
4pqqA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 41.0 4.20e-01 98.2% 78.8%
3winE03 2.60.120.1090 Mainly Beta › Sandwich › Jelly Rolls › 0.54 32.0 3.74e-01 99.4% 84.5%
3gf6A00 2.60.120.750 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF3845 0.53 41.0 3.73e-01 99.4% 60.3%
6accA01 2.60.120.960 Mainly Beta › Sandwich › Jelly Rolls › Spike glycoprotein, N-terminal domain 0.53 48.0 4.03e-01 97.6% 76.7%
3nngA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 39.0 4.05e-01 98.2% 84.3%
3db2B02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 30.0 2.80e-01 88.5% 45.3%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5068490 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.79 67.0 6.43e-01 100.0% 78.4%
4030518 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.76 72.0 6.42e-01 98.8% 86.8%
2474168 10.1.1.41 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 0.75 70.0 6.46e-01 98.8% 91.1%
2102357 10.1.1.20 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TSP_C 0.74 70.0 6.25e-01 98.2% 92.6%
3204303 10.1.1.22 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › DUF1349 0.74 69.0 6.33e-01 99.4% 90.0%
2320976 10.1.1.41 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 0.74 69.0 6.47e-01 100.0% 85.5%
3361087 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.73 69.0 5.73e-01 100.0% 75.6%
3906069 10.1.1.20 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TSP_C 0.73 69.0 6.17e-01 99.4% 89.2%
3219185 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.73 53.0 5.68e-01 98.8% 84.8%
3589313 10.1.1.41 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 0.73 68.0 6.39e-01 100.0% 85.5%
4939191 10.1.1.64 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › DUF2341 0.73 67.0 5.47e-01 98.2% 60.0%
3674173 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.71 66.0 5.37e-01 99.4% 78.3%
3994222 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.71 50.0 4.68e-01 87.3% 59.0%
3371731 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.71 66.0 5.80e-01 100.0% 82.5%
4002267 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.69 53.0 5.40e-01 86.1% 81.9%
3520167 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.68 54.0 5.40e-01 87.3% 81.2%
3513335 10.1.1.83 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Menorin_C 0.68 63.0 5.72e-01 99.4% 92.6%
3712659 10.1.1.56 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C 0.68 62.0 5.69e-01 100.0% 76.7%
2982808 10.1.1.5 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Pentaxin 0.67 54.0 5.14e-01 100.0% 72.0%
3233173 10.1.1.83 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Menorin_C 0.67 62.0 5.62e-01 98.8% 87.0%
3901788 10.1.1.1 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 0.67 50.0 5.01e-01 98.2% 76.4%
3708849 10.1.1.56 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C 0.66 61.0 5.23e-01 100.0% 63.9%
2324015 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.66 47.0 4.82e-01 98.2% 76.4%
5054509 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.66 57.0 5.44e-01 100.0% 79.0%
3573243 10.1.1.9 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY,PRY 0.65 59.0 5.49e-01 97.6% 87.8%
3889446 10.1.1.9 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY,PRY 0.65 59.0 5.31e-01 97.6% 79.1%
3883864 10.1.1.9 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY,PRY 0.65 59.0 5.71e-01 97.6% 89.7%
3901785 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.65 52.0 4.83e-01 86.7% 67.8%
3579826 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.64 52.0 4.94e-01 85.5% 73.3%
3969667 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.64 59.0 5.31e-01 100.0% 76.9%
3903925 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.64 49.0 4.81e-01 86.1% 73.9%
3521811 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.63 53.0 5.19e-01 98.2% 82.9%
3903286 10.1.1.5 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Pentaxin 0.63 50.0 4.76e-01 85.5% 71.3%
3910950 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.63 51.0 4.90e-01 86.1% 78.4%
5034412 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.62 54.0 5.07e-01 100.0% 76.8%
3913267 10.1.1.5 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Pentaxin 0.62 53.0 4.98e-01 98.2% 76.4%
3707942 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 35.0 4.12e-01 98.2% 80.9%
3898844 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.61 55.0 5.13e-01 98.2% 87.5%
5046033 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 39.0 4.26e-01 98.8% 81.5%
3544292 109.4.1.109 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 0.59 54.0 3.40e-01 97.6% 20.1%
3865581 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 54.0 4.87e-01 97.6% 75.5%
3702738 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 52.0 5.07e-01 97.0% 87.2%
3676209 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.58 52.0 5.10e-01 98.8% 89.7%
134088 10.3.1.5 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › DUF3845 0.53 41.0 3.73e-01 99.4% 60.3%
2870992 222.1.1.17 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.53 37.0 4.30e-01 76.4% 99.2%
140303 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.52 39.0 4.07e-01 98.8% 84.9%
3926427 11.1.1.53 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.52 39.0 4.02e-01 98.2% 80.6%
3996785 11.1.1.53 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.51 40.0 4.12e-01 98.8% 85.0%
3946575 3943.1.1.5 ↗ beta sandwiches › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › WZC_N 0.51 27.0 3.49e-01 99.4% 88.4%
3829614 5.1.4.62 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.50 42.0 3.17e-01 90.3% 56.0%
3825307 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 42.0 2.69e-01 89.7% 28.1%
3257657 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.50 42.0 3.15e-01 90.9% 65.0%