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KX925554.1__APC46449.1__X__00188
Bact-VirKX925554.1__APC46449.1__X__00188
Identity
- Accession:
- KX925554 ↗
- Kingdom:
- phage
Quality
79.0
mean pLDDT
Taxonomy
TaxID: 1913591
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-69
Domain cluster:
rep: SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00088__D33-109
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01844.30 best | HNH | 46.7 | 3.90e-12 | 65.2% | 97.9% |
| PF14279.13 | HNH_5 | 43.2 | 4.20e-11 | 65.2% | 78.6% |
| PF13395.13 | HNH_4 | 25.2 | 1.70e-05 | 65.2% | 87.0% |
D2
medium
residues 70-135
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2innB00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.63 | 44.0 | 2.66e-01 | 74.2% | 10.8% |
| 1mhyD00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.62 | 44.0 | 2.66e-01 | 77.3% | 10.0% |
| 4bbqA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.61 | 41.0 | 4.06e-01 | 74.2% | 65.7% |
| 4wh5A00 | 3.30.460.40 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.57 | 41.0 | 3.17e-01 | 77.3% | 88.0% |
| 2fclA00 | 3.30.460.40 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.56 | 40.0 | 3.11e-01 | 77.3% | 89.1% |
| 3pe5A00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.52 | 36.0 | 2.47e-01 | 74.2% | 31.4% |
| 1r94A00 | 2.60.300.12 | Mainly Beta › Sandwich › Hypothetical Protein Aq_1857; Chain: A; › HesB-like domain | 0.52 | 36.0 | 3.25e-01 | 74.2% | 55.7% |
| 2drpA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.52 | 25.0 | 3.22e-01 | 78.8% | 85.3% |
| 4cbvA02 | 2.40.50.1020 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain | 0.51 | 30.0 | 2.50e-01 | 78.8% | 32.2% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3688034 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.83 | 53.0 | 4.53e-01 | 74.2% | 43.0% |
| 5065610 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.81 | 56.0 | 6.07e-01 | 71.2% | 89.1% |
| 3846283 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.73 | 46.0 | 5.17e-01 | 75.8% | 86.0% |
| 4977157 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.72 | 47.0 | 5.36e-01 | 74.2% | 97.8% |
| 4959094 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.68 | 44.0 | 4.72e-01 | 72.7% | 78.2% |
| 3480673 | 375.4.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like | 0.67 | 47.0 | 5.27e-01 | 72.7% | 100.0% |
| 5052404 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.65 | 51.0 | 4.60e-01 | 84.8% | 81.1% |
| 4940336 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.61 | 43.0 | 4.54e-01 | 74.2% | 86.7% |
| 2066836 | 101.1.2.78 ↗ | alpha arrays › HTH › HTH › winged helix domain › AlkZ-like | 0.61 | 41.0 | 3.95e-01 | 71.2% | 84.6% |
| 3591477 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.61 | 38.0 | 3.46e-01 | 74.2% | 46.7% |
| 3743792 | 377.1.1.4 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › GATA | 0.60 | 41.0 | 3.72e-01 | 75.8% | 50.5% |
| 3289362 | 101.1.2.610 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH2_Lhr | 0.59 | 41.0 | 3.56e-01 | 72.7% | 59.0% |
| 4927050 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 40.0 | 3.74e-01 | 72.7% | 74.1% |
| 3959734 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 41.0 | 3.64e-01 | 75.8% | 71.6% |
| 5083603 | 101.1.2.78 ↗ | alpha arrays › HTH › HTH › winged helix domain › AlkZ-like | 0.55 | 41.0 | 3.27e-01 | 80.3% | 44.3% |
| 5057173 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.54 | 37.0 | 2.77e-01 | 71.2% | 37.2% |
| 3829353 | 101.1.2.641 ↗ | alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1, DUF7647 | 0.53 | 39.0 | 2.35e-01 | 78.8% | 39.3% |
| 4998645 | 101.1.2.673 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N | 0.53 | 37.0 | 3.21e-01 | 72.7% | 61.0% |
| 4974473 | 316.1.1.85 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_5 | 0.52 | 37.0 | 2.61e-01 | 77.3% | 77.6% |