Back to structures

KX982260.1__APC46552.1__X__00030

Bact-Vir

KX982260.1__APC46552.1__X__00030

Identity

Accession:
KX982260 ↗
Kingdom:
phage

Quality

83.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-52
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF06322.18 best Phage_NinH 37.0 3.60e-09 92.2% 60.0%
PF02954.26 HTH_8 27.9 2.20e-06 62.7% 59.5%
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1etkA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.90 61.0 5.26e-01 70.6% 48.0%
1d1lA00 3.30.240.10 Alpha Beta › 2-Layer Sandwich › CRO Repressor › CRO Repressor 0.81 69.0 6.60e-01 100.0% 82.0%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 53.0 4.94e-01 70.6% 60.3%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 53.0 4.70e-01 70.6% 55.6%
6s6hA01 1.10.10.2830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.78 52.0 4.05e-01 70.6% 49.5%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 53.0 4.53e-01 72.5% 52.5%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.76 51.0 3.80e-01 70.6% 32.8%
2cw1A00 3.30.240.10 Alpha Beta › 2-Layer Sandwich › CRO Repressor › CRO Repressor 0.76 66.0 6.18e-01 100.0% 78.5%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 50.0 4.91e-01 70.6% 69.6%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 51.0 4.37e-01 72.5% 51.2%
2llkA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 49.0 5.31e-01 70.6% 95.1%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 50.0 4.77e-01 72.5% 68.9%
6uglB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 55.0 5.28e-01 82.4% 98.3%
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 48.0 4.99e-01 70.6% 77.8%
4izzB02 1.10.10.1680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain 0.71 49.0 4.50e-01 72.5% 67.6%
2lfwA01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.71 49.0 3.57e-01 72.5% 85.8%
4pcqA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 49.0 4.95e-01 72.5% 82.0%
3lsgA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 47.0 4.60e-01 72.5% 70.9%
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 47.0 4.76e-01 74.5% 72.5%
3w6kC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 46.0 3.94e-01 72.5% 50.6%
2hinA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 57.0 5.30e-01 98.0% 81.8%
6rnzA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 50.0 4.64e-01 80.4% 71.2%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 46.0 4.56e-01 72.5% 75.9%
2z99A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 45.0 3.84e-01 72.5% 46.0%
2v9vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 45.0 4.32e-01 70.6% 61.7%
2ppxA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 52.0 4.97e-01 90.2% 91.8%
2auwB02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 52.0 4.74e-01 90.2% 88.6%
4ybaA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 52.0 4.57e-01 88.2% 71.4%
3bd1A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 56.0 5.23e-01 98.0% 87.7%
4pu7A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 55.0 4.93e-01 94.1% 70.4%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 54.0 5.00e-01 94.1% 76.9%
3cecA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 55.0 4.57e-01 98.0% 62.6%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 45.0 3.84e-01 78.4% 79.8%
2bnmA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 51.0 4.59e-01 96.1% 73.0%
2r1jL00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 52.0 4.81e-01 98.0% 86.4%
1y9qA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 52.0 4.41e-01 98.0% 82.4%
6f8hC00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 50.0 4.22e-01 98.0% 62.4%
3mlfE00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 52.0 4.42e-01 100.0% 68.6%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 43.0 3.63e-01 80.4% 74.2%
4l8jA01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.59 33.0 2.69e-01 100.0% 25.5%
2xi8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 50.0 4.64e-01 98.0% 86.4%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 3.95e-01 90.2% 86.7%
3op9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 50.0 4.56e-01 98.0% 83.8%
3ivpD01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.57 48.0 4.28e-01 98.0% 70.7%
3fvcA02 1.20.5.1890 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.57 32.0 2.62e-01 100.0% 26.0%
2l02A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 46.0 3.98e-01 92.2% 82.9%
3g7dA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 48.0 4.10e-01 98.0% 58.1%
2h9fA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.55 41.0 2.85e-01 84.3% 93.7%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 3.45e-01 88.2% 49.5%
4at7A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.53 37.0 2.64e-01 70.6% 71.1%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.28e-01 82.4% 88.0%
4m0nA02 3.55.50.30 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › 0.52 39.0 3.47e-01 82.4% 93.5%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 3.62e-01 84.3% 73.9%
1t6sA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.26e-01 82.4% 80.2%
8k1fC01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 37.0 2.59e-01 80.4% 53.6%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4596898 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.93 63.0 5.26e-01 70.6% 45.0%
3969080 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.91 62.0 6.06e-01 70.6% 65.5%
4554905 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.90 61.0 5.75e-01 70.6% 60.0%
4659432 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.90 61.0 5.23e-01 70.6% 48.0%
152212 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.89 60.0 5.41e-01 70.6% 52.9%
4204226 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.89 60.0 6.40e-01 70.6% 80.0%
4333531 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.89 60.0 6.10e-01 70.6% 72.0%
3964673 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.88 60.0 4.77e-01 70.6% 38.3%
3964388 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.88 59.0 5.46e-01 70.6% 56.2%
3970408 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.87 59.0 5.58e-01 70.6% 60.0%
3980517 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.87 59.0 5.58e-01 70.6% 60.0%
4612964 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.87 59.0 6.21e-01 70.6% 80.0%
4414382 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.86 58.0 4.82e-01 70.6% 44.7%
3974476 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.85 58.0 5.66e-01 70.6% 65.5%
3288236 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.85 58.0 4.68e-01 70.6% 42.2%
4007629 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.85 57.0 5.12e-01 70.6% 51.4%
4132433 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.85 57.0 5.28e-01 70.6% 55.4%
3948900 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.84 58.0 5.01e-01 72.5% 54.7%
4342758 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.83 56.0 5.48e-01 70.6% 65.5%
3282047 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.82 55.0 4.38e-01 70.6% 38.0%
4043241 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.82 56.0 4.80e-01 72.5% 47.5%
3949224 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.82 55.0 4.94e-01 70.6% 51.4%
4142399 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.81 56.0 4.57e-01 72.5% 42.2%
3289370 101.1.1.300 alpha arrays › HTH › HTH › Three-helical HTH › HTH_30 0.78 53.0 4.21e-01 70.6% 38.0%
159227 101.1.4.11 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Cro 0.76 66.0 6.18e-01 100.0% 78.5%
3988145 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.76 52.0 5.30e-01 72.5% 78.0%
2389361 101.1.4.11 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Cro 0.75 65.0 6.12e-01 100.0% 82.3%
3967547 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.73 55.0 4.93e-01 80.4% 68.6%
3166400 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.73 51.0 4.74e-01 74.5% 69.2%
4334910 101.1.1.107 alpha arrays › HTH › HTH › Three-helical HTH › DUF134 0.71 56.0 4.18e-01 86.3% 69.6%
3965549 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.71 54.0 4.72e-01 82.4% 64.0%
4461348 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.70 55.0 5.27e-01 86.3% 95.0%
3953011 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.70 50.0 4.89e-01 74.5% 69.1%
2057229 101.1.4.23 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MqsA_antitoxin 0.69 57.0 5.14e-01 90.2% 85.5%
3939238 101.1.1.52 alpha arrays › HTH › HTH › Three-helical HTH › BrkDBD 0.68 59.0 4.93e-01 100.0% 85.6%
4173167 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.67 55.0 5.10e-01 90.2% 75.4%
3587618 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.66 55.0 4.69e-01 94.1% 61.2%
3964522 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.66 53.0 5.00e-01 90.2% 90.5%
5030004 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.66 57.0 4.49e-01 100.0% 63.6%
5033725 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.66 45.0 3.83e-01 72.5% 44.7%
3579797 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 53.0 4.57e-01 100.0% 57.5%
4032747 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.64 57.0 4.76e-01 98.0% 82.4%
3951505 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.64 56.0 4.95e-01 98.0% 74.7%
3952885 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.64 48.0 4.88e-01 80.4% 100.0%
4982971 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.64 55.0 4.77e-01 98.0% 67.5%
3588243 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.61 50.0 4.82e-01 94.1% 88.3%
5037143 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.60 52.0 4.52e-01 98.0% 70.0%
3974678 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.60 51.0 4.75e-01 96.1% 81.5%
4952242 101.1.4.17 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 0.58 49.0 4.48e-01 98.0% 81.4%
4410932 101.1.4.27 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CYNS_N 0.57 49.0 4.42e-01 98.0% 90.0%
5025624 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.55 37.0 3.38e-01 72.5% 52.5%
5039720 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.55 38.0 3.40e-01 74.5% 98.8%
4030214 304.48.1.6 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A 0.55 41.0 3.11e-01 90.2% 49.0%
3831826 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.55 47.0 4.07e-01 98.0% 93.8%
4968723 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 41.0 3.19e-01 90.2% 37.5%
4941847 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.53 44.0 3.69e-01 100.0% 91.6%
4985757 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.52 40.0 3.43e-01 96.1% 92.0%
5042056 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 37.0 3.66e-01 90.2% 74.5%
5078709 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.51 39.0 3.18e-01 88.2% 93.6%
5037085 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 39.0 3.33e-01 88.2% 50.0%