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KY000079.2__APD20214.1__AM24_006__00006

Bact-Vir

KY000079.2__APD20214.1__AM24_006__00006

Identity

Accession:
KY000079 ↗
Kingdom:
phage

Quality

73.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Acinetobacter_phage_AM24

TaxID: 1913571

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-103
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bfiB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.79 41.0 4.33e-01 100.0% 56.7%
2n8xA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.79 55.0 4.54e-01 70.3% 59.0%
3bf2A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.74 51.0 4.77e-01 71.3% 96.0%
6efyA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.73 41.0 4.22e-01 100.0% 58.2%
1nrfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.71 46.0 3.44e-01 76.2% 26.8%
6x4tA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 40.0 4.31e-01 100.0% 65.9%
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.70 49.0 4.29e-01 71.3% 65.1%
3uebF00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.70 48.0 4.89e-01 98.0% 72.0%
1fp5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 42.0 4.25e-01 100.0% 62.0%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.65 44.0 4.22e-01 100.0% 60.2%
1sqeA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 40.0 4.05e-01 100.0% 62.4%
2ichA01 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.64 52.0 4.30e-01 88.1% 83.8%
6nhsA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.64 40.0 3.07e-01 91.1% 26.8%
2f4lA03 3.10.28.20 Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains 0.63 43.0 4.73e-01 99.0% 88.7%
2bbeA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 39.0 3.91e-01 100.0% 61.2%
2y8yA01 3.30.70.1200 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 1 0.62 39.0 4.19e-01 96.0% 74.4%
1ocsA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 43.0 3.96e-01 72.3% 84.8%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.59 48.0 4.55e-01 88.1% 96.7%
4dpoB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 38.0 3.80e-01 100.0% 64.4%
2hdiA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.59 39.0 2.50e-01 74.3% 14.6%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.58 46.0 4.38e-01 85.1% 91.0%
2og9A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 49.0 4.58e-01 94.1% 96.2%
3bm7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 37.0 3.69e-01 100.0% 60.4%
4frxA01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.57 47.0 3.18e-01 89.1% 94.9%
4mdaA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 47.0 3.83e-01 92.1% 48.5%
5jeaD00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.57 45.0 3.47e-01 85.1% 99.1%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.56 45.0 4.04e-01 88.1% 89.2%
2od6C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 37.0 3.65e-01 100.0% 63.6%
5tvfD00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.55 46.0 3.37e-01 91.1% 68.9%
4q9bA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 4.40e-01 86.1% 100.0%
2jlpB00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.55 40.0 3.47e-01 78.2% 88.0%
2bc4A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 4.32e-01 88.1% 92.7%
2mklC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 4.35e-01 87.1% 98.1%
3cjeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.54 45.0 3.89e-01 87.1% 71.3%
3cxjA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.54 46.0 4.08e-01 91.1% 75.7%
1fyhB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 4.37e-01 86.1% 98.1%
1lshA01 2.30.230.10 Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A 0.54 49.0 3.62e-01 100.0% 92.4%
1cjyA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 47.0 4.40e-01 98.0% 98.4%
4cgyA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.54 37.0 3.46e-01 98.0% 56.2%
2axyA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.54 31.0 3.58e-01 99.0% 79.2%
1uynX00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.53 45.0 3.39e-01 97.0% 94.3%
4ofyD02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 4.14e-01 86.1% 97.2%
7r3eB02 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.53 46.0 3.98e-01 98.0% 62.6%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.52 38.0 3.68e-01 89.1% 66.7%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.52 36.0 3.43e-01 71.3% 84.4%
2qomB00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.51 42.0 3.28e-01 97.0% 84.8%
3c18A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 29.0 3.67e-01 95.0% 98.2%
6lofA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.51 40.0 3.48e-01 85.1% 53.7%
3bp6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 4.22e-01 85.1% 100.0%
1gmiA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 44.0 4.08e-01 100.0% 94.8%
2db8A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 40.0 3.97e-01 88.1% 87.3%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5043373 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.86 49.0 4.58e-01 97.0% 48.3%
3838085 7503.1.1.11 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › HP1454-like_C 0.80 52.0 5.31e-01 70.3% 67.0%
4940463 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.76 55.0 4.93e-01 100.0% 55.6%
4177430 7520.1.1.1 ↗ a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like › CinA 0.73 51.0 4.42e-01 71.3% 92.0%
4932446 504.1.1.0 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.70 48.0 4.55e-01 70.3% 82.5%
5040659 256.1.1.1 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › Archease 0.69 41.0 4.77e-01 99.0% 84.3%
3605420 2484.1.1.26 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.68 59.0 4.37e-01 93.1% 72.4%
3244569 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.67 46.0 4.93e-01 71.3% 82.4%
4416349 304.162.1.1 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.66 36.0 4.07e-01 100.0% 68.8%
3620578 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.65 45.0 3.86e-01 72.3% 65.5%
4383357 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.65 53.0 4.76e-01 89.1% 90.7%
5072207 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.64 55.0 3.88e-01 93.1% 76.8%
4990857 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.64 57.0 4.11e-01 99.0% 76.3%
3583426 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.64 45.0 4.04e-01 72.3% 77.1%
1146572 304.152.1.1 ↗ a+b two layers › Alpha-beta plaits › E4-ORF3 › E4-ORF3 › Adeno_E4_ORF3 0.64 43.0 4.12e-01 98.0% 59.5%
5033918 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.64 52.0 4.30e-01 88.1% 82.2%
3509864 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.63 45.0 4.18e-01 73.3% 82.4%
5022763 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 43.0 3.00e-01 70.3% 35.7%
4017244 3385.1.1.2 ↗ beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 › PF27986 0.62 52.0 4.87e-01 91.1% 100.0%
3871082 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.61 42.0 3.69e-01 70.3% 68.0%
4018306 3385.1.1.1 ↗ beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 › AltA1 0.61 54.0 4.75e-01 100.0% 100.0%
3840554 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.61 37.0 3.92e-01 100.0% 67.8%
3604240 71.1.1.25 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF6612 0.61 50.0 3.94e-01 88.1% 80.5%
4994641 304.19.1.1 ↗ a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.61 38.0 3.95e-01 97.0% 65.3%
5052894 304.19.1.1 ↗ a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.61 38.0 3.99e-01 100.0% 67.7%
3546691 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.61 55.0 5.21e-01 100.0% 97.5%
3271615 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 45.0 2.95e-01 78.2% 43.4%
5074162 304.126.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.60 33.0 3.45e-01 100.0% 54.7%
3876259 2484.1.1.15 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39 0.60 51.0 4.22e-01 95.0% 59.5%
4937593 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.59 48.0 3.76e-01 88.1% 83.9%
4109482 223.1.1.182 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › DUF3369 0.59 47.0 3.95e-01 99.0% 50.6%
4015605 3385.1.1.0 ↗ beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 0.59 52.0 4.39e-01 100.0% 96.0%
3227607 5087.2.1.2 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 0.58 53.0 3.78e-01 100.0% 90.3%
3515540 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.57 42.0 3.82e-01 86.1% 59.2%
4180585 7520.1.1.1 ↗ a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like › CinA 0.57 53.0 4.57e-01 100.0% 89.3%
5041649 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.56 45.0 3.46e-01 97.0% 37.8%
4347483 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.56 49.0 3.42e-01 100.0% 71.5%
5192 304.4.1.28 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF6974 0.56 38.0 3.71e-01 100.0% 63.3%
4948088 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 3.87e-01 89.1% 68.6%
3647427 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.55 37.0 3.43e-01 97.0% 53.8%
4942321 283.2.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.55 43.0 4.33e-01 99.0% 85.0%
4162922 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.55 47.0 3.45e-01 100.0% 82.6%
4388144 222.1.1.5 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › FabA 0.54 38.0 3.26e-01 71.3% 72.8%
3933484 241.1.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.54 41.0 3.49e-01 80.2% 64.8%
5064795 264.2.1.1 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac 0.54 36.0 3.40e-01 96.0% 56.7%
2373 5087.2.1.2 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 0.54 49.0 3.60e-01 100.0% 90.7%
3839285 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.54 43.0 3.61e-01 88.1% 90.8%
3456752 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 43.0 3.04e-01 89.1% 43.3%
3074009 9.1.1.31 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › VtrC 0.54 43.0 3.96e-01 87.1% 88.0%
885 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.53 45.0 3.39e-01 97.0% 94.3%
3512773 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.53 37.0 3.58e-01 97.0% 63.5%
4006163 5084.5.4.13 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › DUF481, Porin_OmpG 0.52 42.0 3.06e-01 87.1% 86.8%
3887429 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 3.79e-01 100.0% 62.8%
3729448 868.1.1.10 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › DUF7905 0.52 43.0 2.99e-01 90.1% 38.6%
3938171 11.1.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.51 40.0 4.03e-01 86.1% 99.0%
3840004 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.51 39.0 3.20e-01 86.1% 89.7%
3188256 12.3.1.28 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_92N 0.51 39.0 2.93e-01 94.1% 31.7%
3590631 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 44.0 3.33e-01 99.0% 90.8%
3517845 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.50 40.0 4.01e-01 88.1% 92.4%
3854192 11.1.1.947 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › VEGFR-1-like_Ig-like, VEGFR1-3_N_Ig-like 0.50 38.0 3.17e-01 81.2% 50.8%
4966157 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.50 40.0 3.35e-01 89.1% 57.9%