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KY000080.1__APD20471.1__X__00115
Bact-VirKY000080.1__APD20471.1__X__00115
Identity
- Accession:
- KY000080 ↗
- Kingdom:
- phage
Quality
75.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Jiaodavirus›
Klebsiella_phage_KPV15
TaxID: 1913572
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-76
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2iylD01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.74 | 52.0 | 5.49e-01 | 87.8% | 83.1% |
| 5ojcA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.72 | 53.0 | 4.21e-01 | 79.7% | 81.2% |
| 3pu9A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.66 | 55.0 | 3.79e-01 | 89.2% | 46.8% |
| 2whnA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.66 | 54.0 | 4.69e-01 | 98.6% | 59.1% |
| 1sxjE03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.66 | 56.0 | 5.21e-01 | 100.0% | 80.4% |
| 6fhpD00 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.65 | 47.0 | 5.04e-01 | 78.4% | 91.9% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.62 | 47.0 | 4.63e-01 | 81.1% | 85.9% |
| 3rnrB00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.61 | 53.0 | 3.86e-01 | 98.6% | 68.7% |
| 3s63A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.61 | 51.0 | 4.90e-01 | 100.0% | 85.2% |
| 2j4jF00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.60 | 52.0 | 3.78e-01 | 100.0% | 85.0% |
| 3ke6B01 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.59 | 49.0 | 3.47e-01 | 89.2% | 49.3% |
| 3a7mA01 | 1.20.58.380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. | 0.59 | 33.0 | 2.96e-01 | 100.0% | 36.4% |
| 3zh9B03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.59 | 49.0 | 4.25e-01 | 100.0% | 90.5% |
| 4fqnC00 | 1.20.1160.20 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › | 0.58 | 37.0 | 3.64e-01 | 73.0% | 57.6% |
| 3clqA02 | 3.90.1710.10 | Alpha Beta › Alpha-Beta Complex › Enterococcus faecalis V583 fold › Enterococcus faecalis V583 domain | 0.56 | 43.0 | 3.49e-01 | 86.5% | 88.0% |
| 3himA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 40.0 | 3.03e-01 | 89.2% | 29.5% |
| 1irxA05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.56 | 45.0 | 4.24e-01 | 94.6% | 82.8% |
| 2hujA00 | 1.20.120.440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like | 0.53 | 47.0 | 3.96e-01 | 98.6% | 82.4% |
| 4mdvB03 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.52 | 35.0 | 3.31e-01 | 70.3% | 70.3% |
| 4b8cJ01 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.52 | 45.0 | 3.38e-01 | 100.0% | 84.4% |
| 3c18A02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.51 | 42.0 | 3.74e-01 | 97.3% | 72.0% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4169641 | 138.1.1.2 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C | 0.66 | 57.0 | 5.39e-01 | 100.0% | 87.8% |
| 5073062 | 138.1.1.2 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C | 0.65 | 55.0 | 4.87e-01 | 100.0% | 68.7% |
| 4994376 | 3457.1.1.3 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II | 0.62 | 44.0 | 3.14e-01 | 75.7% | 25.4% |
| 3925645 | 3198.1.1.1 ↗ | alpha bundles › ABA-1 repeat unit › ABA-1 repeat unit › ABA-1 repeat unit › NPA | 0.62 | 45.0 | 3.87e-01 | 79.7% | 48.3% |
| 4003455 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.60 | 51.0 | 5.04e-01 | 98.6% | 93.7% |
| 4928656 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 48.0 | 4.10e-01 | 87.8% | 60.0% |
| 3965046 | 604.12.1.76 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › IspA | 0.60 | 42.0 | 4.36e-01 | 75.7% | 92.9% |
| 4929005 | 3457.1.1.1 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 | 0.59 | 51.0 | 3.66e-01 | 100.0% | 90.6% |
| 3427778 | 604.1.1.144 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF26575 | 0.59 | 41.0 | 4.07e-01 | 74.3% | 100.0% |
| 5079791 | 3457.1.1.3 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II | 0.59 | 49.0 | 3.34e-01 | 95.9% | 58.7% |
| 5056832 | 3457.1.1.1 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 | 0.59 | 49.0 | 3.97e-01 | 98.6% | 63.7% |
| 4934484 | 3457.1.1.1 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 | 0.58 | 51.0 | 3.65e-01 | 100.0% | 92.6% |
| 3886005 | 601.2.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes | 0.56 | 46.0 | 4.08e-01 | 95.9% | 89.6% |
| 3721752 | 5086.1.1.170 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Not3 | 0.55 | 39.0 | 3.34e-01 | 74.3% | 48.0% |
| 5029465 | 3457.1.1.1 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 | 0.55 | 45.0 | 3.66e-01 | 98.6% | 67.9% |
| 3903366 | 310.2.1.39 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › PF25974 | 0.55 | 42.0 | 3.76e-01 | 82.4% | 84.8% |
| 3804806 | 192.29.1.34 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF677 | 0.55 | 45.0 | 3.93e-01 | 97.3% | 64.0% |
| 3909203 | 109.24.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in dedicator of cytokinesis protein 9 › Helical domain in dedicator of cytokinesis protein 9 › DHR-2_Lobe_C | 0.51 | 36.0 | 3.13e-01 | 75.7% | 87.2% |
| 3582455 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.51 | 36.0 | 3.67e-01 | 77.0% | 89.3% |
| 5019906 | 3457.1.1.3 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II | 0.50 | 42.0 | 2.99e-01 | 95.9% | 46.5% |
D2
medium
residues 79-148