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KY000080.1__APD20568.1__X__00212

Bact-Vir

KY000080.1__APD20568.1__X__00212

Identity

Accession:
KY000080 ↗
Kingdom:
phage

Quality

92.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Jiaodavirus› Klebsiella_phage_KPV15

TaxID: 1913572

Cluster

View cluster (49 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-133
PDB
Domain cluster: rep: HE815464.1__CCH63538.1__X__00076__D34-148
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17481.8 best Phage_sheath_domII 37.0 5.50e-09 97.7% 71.4%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hxlA02 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.79 47.0 5.55e-01 95.4% 84.4%
3lmlA03 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.78 47.0 5.80e-01 95.4% 92.9%
1b9vA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.59 47.0 3.40e-01 86.2% 70.8%
2aujD03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 26.0 3.74e-01 80.0% 90.3%
1inyA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.57 46.0 3.30e-01 86.9% 71.1%
4k3yC00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.57 46.0 3.38e-01 86.9% 74.1%
3q8dA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 25.0 3.09e-01 87.7% 68.8%
3nppA00 2.40.50.480 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 0.54 34.0 4.00e-01 80.0% 94.3%
4euyA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 27.0 3.17e-01 80.0% 68.6%
1iarB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 35.0 4.00e-01 86.9% 89.6%
2qh9A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.52 40.0 3.66e-01 83.1% 94.4%
1nkgA02 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.51 31.0 3.68e-01 79.2% 90.6%
4umgA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 31.0 3.50e-01 86.9% 78.4%
3u2gA02 2.60.98.40 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain 0.50 40.0 4.11e-01 96.9% 86.0%
1e8uA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.50 41.0 2.95e-01 92.3% 88.3%
1s3zA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 37.0 3.60e-01 76.9% 74.8%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
358962 4401.1.1.1 ↗ a+b complex topology › Domain II in tail sheath protein Gp18 › Domain II in tail sheath protein Gp18 › Domain II in tail sheath protein Gp18 › Phage_sheath_domII 0.99 97.0 8.63e-01 100.0% 78.6%
3931156 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 32.0 4.31e-01 75.4% 87.1%
5008207 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 35.0 4.37e-01 95.4% 87.5%
136506 4075.1.1.2 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.62 40.0 4.55e-01 93.1% 85.9%
144144 5.1.3.3 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Neur 0.59 47.0 3.42e-01 86.9% 71.1%
4990901 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.59 31.0 4.11e-01 84.6% 95.7%
4934276 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.58 34.0 4.35e-01 80.8% 100.0%
3211606 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 31.0 3.73e-01 86.2% 78.8%
4958520 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 30.0 3.20e-01 88.5% 58.2%
5059898 11.1.1.1410 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CarboxypepD_reg 0.55 34.0 4.19e-01 78.5% 100.0%
5055096 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 33.0 4.14e-01 81.5% 98.8%
4934788 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 32.0 4.05e-01 77.7% 100.0%
5010980 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 32.0 3.98e-01 88.5% 96.2%
4934273 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.54 30.0 3.84e-01 85.4% 94.7%
3708150 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 43.0 3.13e-01 85.4% 62.2%
3512065 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 24.0 3.35e-01 71.5% 84.6%
4956425 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 33.0 3.85e-01 92.3% 93.3%
5042577 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 29.0 3.62e-01 84.6% 94.7%
4376478 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.50 30.0 3.59e-01 85.4% 86.7%
3259054 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 33.0 3.76e-01 92.3% 90.5%
D2 medium residues 142-242
PDB
Domain cluster: rep: OR525702.1__WQN07426.1__X__00173__D62-83_377-453
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04984.20 best Phage_sheath_1 41.2 2.30e-10 100.0% 55.4%
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3foaB01 3.40.50.11780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.98 95.0 7.04e-01 100.0% 45.9%
3op2A02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.69 48.0 3.68e-01 98.0% 30.5%
4m7tA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.67 49.0 3.69e-01 100.0% 31.3%
1e6pB01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.67 52.0 3.57e-01 83.2% 48.9%
6l25A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.66 52.0 3.84e-01 98.0% 32.9%
1f2dA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.66 41.0 4.17e-01 79.2% 61.8%
2hzgA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.66 50.0 3.80e-01 98.0% 33.1%
3rcyA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.64 46.0 3.49e-01 97.0% 30.7%
3g1wA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 42.0 3.77e-01 98.0% 47.3%
1qnrA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.62 54.0 3.81e-01 100.0% 40.4%
3l49A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 43.0 3.87e-01 100.0% 51.0%
4b8wB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 53.0 4.28e-01 98.0% 55.9%
2a4aA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.61 49.0 3.72e-01 100.0% 35.6%
2jl1A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 46.0 3.93e-01 94.1% 48.5%
7jt8I02 3.90.190.20 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain 0.60 49.0 4.38e-01 98.0% 62.5%
6nbrC00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 52.0 3.72e-01 98.0% 47.1%
8fumD01 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.59 52.0 3.56e-01 96.0% 41.9%
2wyhB02 1.10.1240.90 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.59 49.0 4.91e-01 100.0% 89.6%
2q09A02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.58 51.0 3.69e-01 100.0% 83.6%
2zc1A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.57 50.0 3.57e-01 100.0% 85.9%
5kbpA01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.57 50.0 3.67e-01 100.0% 35.6%
1bwpA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.57 51.0 4.03e-01 100.0% 73.6%
3pvzB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 50.0 3.63e-01 100.0% 42.7%
2c54A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 50.0 4.10e-01 98.0% 60.7%
3d02A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 45.0 3.97e-01 88.1% 81.0%
5hsgA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 45.0 3.94e-01 89.1% 78.1%
2gn4B01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 49.0 3.74e-01 98.0% 41.7%
4rsmA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 46.0 4.01e-01 89.1% 78.7%
6qkgA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 48.0 3.35e-01 100.0% 29.4%
4mfiA00 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 42.0 2.84e-01 81.2% 60.3%
4ry9A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 46.0 3.92e-01 90.1% 82.7%
2vk2A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 45.0 3.85e-01 89.1% 79.4%
5bq3A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 44.0 3.88e-01 88.1% 80.6%
6oibA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 49.0 4.31e-01 100.0% 70.9%
5ix8A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 45.0 3.91e-01 89.1% 78.6%
4y9tA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 44.0 3.69e-01 87.1% 73.3%
5f7cA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 45.0 3.23e-01 97.0% 29.2%
4wzzA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 44.0 3.82e-01 88.1% 81.1%
3wrwA02 3.40.50.12030 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Uncharacterised protein family UPF0261, NC domain 0.55 47.0 3.74e-01 98.0% 53.6%
4ru1A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 45.0 3.99e-01 90.1% 81.8%
3e48A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 48.0 3.96e-01 98.0% 56.3%
3qi7A02 3.40.50.11390 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 45.0 3.87e-01 100.0% 56.3%
1auiA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.54 45.0 3.09e-01 98.0% 24.6%
2dr3A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 47.0 3.63e-01 98.0% 48.3%
4yv7A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 45.0 3.90e-01 92.1% 80.3%
1bapA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 44.0 3.73e-01 89.1% 77.8%
1pgvA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.53 48.0 4.07e-01 100.0% 64.1%
1jakA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.53 46.0 3.32e-01 98.0% 38.0%
4rweA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 43.0 3.75e-01 89.1% 80.5%
3cjdA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 40.0 3.41e-01 83.2% 80.2%
3k1tA02 3.40.50.11280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutamate-cysteine ligase, N-terminal domain 0.53 42.0 3.79e-01 90.1% 62.6%
1j24A00 3.40.50.10130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 38.0 3.55e-01 88.1% 58.6%
3n2oA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.53 46.0 3.41e-01 100.0% 46.5%
2rjoA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 42.0 3.58e-01 88.1% 71.7%
3m9wA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 44.0 3.77e-01 92.1% 84.0%
5hc8A00 3.40.1180.10 Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like 0.52 46.0 3.53e-01 100.0% 48.7%
3d8bA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 44.0 3.50e-01 96.0% 73.9%
7paxA01 3.40.1180.10 Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like 0.50 44.0 3.31e-01 100.0% 43.8%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4888782 2499.2.1.2 ↗ a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1,Gp18_domIII_N 0.87 80.0 5.52e-01 94.1% 41.4%
3970285 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.66 52.0 4.20e-01 94.1% 44.2%
4869534 2002.1.1.171 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF4038 0.65 57.0 3.94e-01 97.0% 35.5%
4643350 300.1.1.8 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.64 46.0 3.51e-01 100.0% 31.7%
5058870 300.1.1.8 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.64 47.0 4.11e-01 100.0% 51.0%
5066062 7584.1.1.1 ↗ a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding 0.64 49.0 4.32e-01 99.0% 55.3%
3575221 300.1.1.8 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.63 47.0 3.65e-01 100.0% 35.2%
3957559 2002.1.1.48 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › FMN_dh 0.62 43.0 3.76e-01 93.1% 46.5%
4878167 300.1.1.8 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.61 50.0 3.84e-01 100.0% 38.5%
3486755 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.61 46.0 4.26e-01 98.0% 62.3%
3399777 300.1.1.8 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.61 46.0 3.54e-01 100.0% 34.2%
2771289 7570.1.1.1 ↗ a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › Mur_ligase_C 0.61 50.0 4.31e-01 94.1% 57.8%
3941120 2002.1.1.7 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.61 54.0 3.61e-01 100.0% 34.3%
3707257 207.1.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 0.60 54.0 3.18e-01 100.0% 18.2%
3487085 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.59 51.0 4.45e-01 95.0% 73.9%
3263558 300.1.1.8 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.59 46.0 3.44e-01 100.0% 31.9%
None — 0.58 51.0 3.61e-01 97.0% 37.1%
3251874 7534.1.1.1 ↗ a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Prenyltransf 0.57 47.0 3.53e-01 91.1% 53.5%
3435539 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.57 45.0 3.64e-01 100.0% 42.4%
3675053 2004.1.1.94 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP_bind_1 0.57 46.0 3.95e-01 89.1% 66.5%
3476024 7534.1.1.1 ↗ a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Prenyltransf 0.56 45.0 3.86e-01 88.1% 80.4%
4985930 7534.1.1.1 ↗ a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Prenyltransf 0.56 47.0 3.44e-01 94.1% 47.8%
3629727 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.56 49.0 3.77e-01 98.0% 76.2%
3289809 2003.1.1.67 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_10 0.55 48.0 3.96e-01 98.0% 59.5%
3526218 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.55 47.0 3.55e-01 96.0% 62.5%
3450430 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 47.0 4.01e-01 97.0% 66.3%
4970835 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 49.0 3.84e-01 98.0% 52.4%
None — 0.54 44.0 3.68e-01 100.0% 50.0%
3660842 2004.1.1.530 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, AAA_lid_3 0.53 46.0 3.13e-01 97.0% 40.0%
3934644 207.1.1.114 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_TMOD-LMOD 0.53 47.0 3.61e-01 99.0% 46.1%
4947261 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.53 46.0 3.65e-01 96.0% 76.4%
None — 0.53 45.0 3.81e-01 94.1% 92.3%
5029045 7534.1.1.1 ↗ a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Prenyltransf 0.53 46.0 3.62e-01 100.0% 50.2%
3595550 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 45.0 3.48e-01 96.0% 69.8%
2529872 246.2.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases 0.52 46.0 3.43e-01 97.0% 41.0%
3205325 2004.1.1.425 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, DUF815 0.52 44.0 3.64e-01 95.0% 85.3%
3655863 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.52 42.0 3.57e-01 90.1% 87.4%
3737415 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.52 45.0 3.02e-01 98.0% 39.8%
3299486 2007.9.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR 0.51 43.0 4.18e-01 91.1% 82.7%
3651087 207.1.1.95 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.50 44.0 3.31e-01 98.0% 41.6%
D3 medium residues 243-357
PDB
Domain cluster: rep: LacPavin_0818_WC40_scaffold_30711_prodigal-single.1__X__X__00126__D43-145
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04984.20 best Phage_sheath_1 61.9 9.70e-17 81.7% 47.0%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hxlA04 3.30.1370.220 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.78 52.0 6.19e-01 78.3% 100.0%
3fgtA01 2.10.70.60 Mainly Beta › Ribbon › Complement Module; domain 1 › Phospholipase B-like, domain 1 0.58 26.0 3.59e-01 73.9% 87.3%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4888782 2499.2.1.2 ↗ a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1,Gp18_domIII_N 0.97 94.0 6.73e-01 100.0% 41.0%
4995822 2499.2.1.1 ↗ a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 0.96 80.0 5.85e-01 85.2% 39.2%
5004680 2499.2.1.1 ↗ a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 0.95 75.0 5.37e-01 83.5% 33.5%
4882286 2499.2.1.1 ↗ a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 0.94 74.0 6.64e-01 86.1% 62.3%
2832219 2499.2.1.0 ↗ a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 0.89 72.0 4.83e-01 83.5% 39.2%
3978226 2499.2.1.1 ↗ a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 0.89 72.0 5.17e-01 83.5% 35.0%
2141717 2499.2.1.5 ↗ a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › VipB 0.86 70.0 4.85e-01 84.3% 39.6%
3944167 2499.2.1.2 ↗ a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1,Gp18_domIII_N 0.86 69.0 5.03e-01 82.6% 35.2%
2468538 2499.2.1.0 ↗ a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 0.86 69.0 5.08e-01 85.2% 37.0%
3947382 2499.2.1.5 ↗ a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › VipB 0.86 69.0 4.79e-01 83.5% 39.7%
1515363 2499.2.1.5 ↗ a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › VipB 0.84 67.0 4.82e-01 83.5% 44.8%
1518917 2499.2.1.2 ↗ a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1,Gp18_domIII_N 0.83 67.0 4.89e-01 84.3% 35.2%
4988098 2499.2.1.0 ↗ a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 0.83 56.0 4.29e-01 89.6% 33.6%
4873217 2499.2.1.1 ↗ a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 0.80 67.0 6.06e-01 93.9% 66.9%
D4 medium residues 358-453
PDB
Domain cluster: rep: IMGVR_UViG_3300010327_000704-3300010327-Ga0116246_1000102125__D309-398
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17482.8 best Phage_sheath_1C 64.7 1.00e-17 86.5% 79.8%