←Back to structures

KY000080.1__APD20625.1__X__00269

Bact-Vir

KY000080.1__APD20625.1__X__00269

Identity

Accession:
KY000080 ↗
Kingdom:
phage

Quality

70.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Jiaodavirus› Klebsiella_phage_KPV15

TaxID: 1913572

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-72
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 41.0 4.29e-01 100.0% 63.3%
1nnvA01 3.10.450.140 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › dsDNA mimic, putative 0.60 47.0 4.11e-01 100.0% 56.0%
2rghA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 50.0 3.40e-01 98.4% 53.8%
1fl2A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 50.0 4.09e-01 100.0% 91.1%
2zbwA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 50.0 4.09e-01 100.0% 92.7%
4udqA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 48.0 3.10e-01 98.4% 58.0%
2xzmE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 44.0 3.69e-01 85.9% 79.3%
4hc5D00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 38.0 3.06e-01 82.8% 33.6%
3lzwA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 48.0 4.06e-01 100.0% 92.4%
7e52A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 48.0 3.96e-01 100.0% 90.6%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 39.0 3.81e-01 78.1% 66.2%
4hn3A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.56 43.0 2.81e-01 87.5% 62.0%
2mklC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 42.0 3.59e-01 81.2% 88.6%
3e1tA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 46.0 3.22e-01 98.4% 32.9%
2w59A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 3.66e-01 82.8% 93.0%
3po3S02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 38.0 3.62e-01 100.0% 62.2%
3dghA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 46.0 3.83e-01 100.0% 91.9%
4iq0C02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 41.0 3.03e-01 84.4% 31.5%
1twfI02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.54 36.0 3.48e-01 100.0% 59.2%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 42.0 3.82e-01 87.5% 75.6%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.53 42.0 3.57e-01 92.2% 64.1%
1z94B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 44.0 3.44e-01 95.3% 51.7%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.52 29.0 3.19e-01 87.5% 70.5%
3ib5A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.52 40.0 2.65e-01 92.2% 61.7%
2hzpA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 40.0 2.96e-01 85.9% 84.5%
4kfuA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 45.0 3.19e-01 100.0% 95.6%
1wgqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 39.0 3.30e-01 85.9% 70.6%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3601903 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.68 39.0 2.85e-01 100.0% 22.5%
2426920 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.65 40.0 4.26e-01 100.0% 71.4%
3496489 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.63 41.0 4.63e-01 100.0% 93.3%
4025648 2004.1.1.414 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 0.61 40.0 2.83e-01 82.8% 21.5%
3769507 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.61 40.0 3.88e-01 100.0% 61.4%
3449268 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 39.0 3.56e-01 100.0% 49.4%
4014871 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.60 50.0 3.25e-01 98.4% 79.7%
4985699 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.60 43.0 4.16e-01 81.2% 66.7%
5068435 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.59 40.0 4.20e-01 100.0% 81.8%
3773038 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.59 37.0 4.15e-01 79.7% 88.9%
5044773 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.58 37.0 4.05e-01 98.4% 84.0%
3928839 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.58 41.0 3.12e-01 82.8% 31.0%
5014317 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 37.0 3.51e-01 100.0% 52.5%
4583494 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.58 50.0 3.99e-01 100.0% 87.4%
2060945 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.57 49.0 4.08e-01 100.0% 92.6%
None — 0.57 48.0 3.13e-01 98.4% 57.8%
3317147 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.57 36.0 4.06e-01 100.0% 100.0%
3305600 375.1.1.80 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Dof 0.57 31.0 3.67e-01 71.9% 80.0%
4071090 2003.1.2.30 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_3 0.57 49.0 3.92e-01 100.0% 85.2%
5033432 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.57 48.0 3.85e-01 100.0% 90.0%
4811569 2003.1.2.7 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.57 42.0 2.87e-01 81.2% 68.8%
5030227 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.57 39.0 4.09e-01 100.0% 83.6%
4459996 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.57 48.0 3.92e-01 100.0% 84.6%
3425721 252.1.1.2 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › DUF7028 0.56 38.0 3.69e-01 82.8% 61.3%
4157035 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.56 47.0 3.85e-01 100.0% 80.7%
4053315 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.56 48.0 3.95e-01 100.0% 86.4%
4157635 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.56 47.0 3.91e-01 100.0% 64.8%
2775775 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.56 48.0 3.13e-01 100.0% 35.9%
4000395 2007.1.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.56 42.0 3.05e-01 85.9% 40.0%
None — 0.56 47.0 3.07e-01 98.4% 59.7%
4995512 4294.1.1.2 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p 0.55 38.0 3.90e-01 84.4% 78.3%
3645101 375.1.1.80 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Dof 0.55 38.0 4.16e-01 100.0% 96.0%
3551490 387.1.1.10 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF 0.55 31.0 3.46e-01 96.9% 72.0%
3989295 2003.1.2.30 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_3 0.55 46.0 3.85e-01 100.0% 90.0%
3517888 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.54 39.0 3.54e-01 78.1% 54.4%
3768832 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.54 33.0 3.57e-01 78.1% 70.9%
3578188 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 44.0 3.17e-01 93.8% 40.5%
3500542 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 41.0 3.68e-01 87.5% 60.0%
3397253 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 43.0 3.18e-01 93.8% 51.7%
5052993 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.52 43.0 3.08e-01 93.8% 90.7%
4225185 220.1.1.154 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_EXO84 0.52 43.0 3.21e-01 93.8% 57.6%
3559299 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 43.0 3.46e-01 92.2% 63.1%
3497828 220.1.1.34 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_9 0.51 43.0 2.91e-01 92.2% 40.6%
3629491 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 29.0 3.13e-01 71.9% 63.6%
3701501 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 35.0 3.57e-01 73.4% 89.2%
3221377 9.11.1.0 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.51 39.0 3.23e-01 84.4% 49.6%
3529782 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.50 40.0 3.34e-01 87.5% 67.0%
3990077 330.7.1.0 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.50 34.0 3.01e-01 84.4% 45.0%
3255028 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.50 39.0 2.96e-01 87.5% 52.4%