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KY000080.1__APD20653.1__X__00297

Bact-Vir

KY000080.1__APD20653.1__X__00297

Identity

Accession:
KY000080 ↗
Kingdom:
phage

Quality

71.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Jiaodavirus› Klebsiella_phage_KPV15

TaxID: 1913572

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-108
PDB
Domain cluster: rep: OY757064.1__CAK1256876.1__K62PH164C2_LOCUS25__00025__D156-231
D2 high residues 365-473
PDB
Domain cluster: rep: OR231919.1__WKW88541.1__pzkkv23_115__00115__D550-676
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xszA03 3.30.310.140 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › sec7 domains 0.63 48.0 4.24e-01 93.6% 55.4%
1u17A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 47.0 3.95e-01 90.8% 49.2%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.58 44.0 3.83e-01 82.6% 52.4%
2yfoA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.57 51.0 3.71e-01 100.0% 52.3%
2owpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 45.0 4.29e-01 87.2% 95.3%
3ci0J01 3.10.610.10 Alpha Beta › Roll › Pili subunits › GSPII I/J protein-like 0.56 39.0 4.02e-01 93.6% 76.0%
3g16B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 42.0 3.85e-01 83.5% 78.9%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 39.0 3.73e-01 95.4% 63.0%
2kf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 43.0 3.73e-01 96.3% 55.1%
3kyaA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 49.0 3.38e-01 100.0% 49.0%
1gpqB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.54 40.0 3.82e-01 100.0% 67.2%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 40.0 2.89e-01 78.9% 39.5%
3uaqB02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.53 44.0 3.84e-01 90.8% 90.2%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4461912 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.59 47.0 4.76e-01 87.2% 85.5%
3722127 9.2.1.2 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Vac_ImportDeg 0.56 47.0 3.83e-01 91.7% 79.5%
3596847 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 34.0 3.52e-01 74.3% 71.4%
3700022 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.50 34.0 3.49e-01 75.2% 72.4%
D3 medium residues 159-248
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4iglB00 2.180.10.10 Mainly Beta › Shell › RHS repeat-associated core › RHS repeat-associated core 0.65 48.0 2.83e-01 76.7% 17.1%
4a0tA01 6.20.80.10 Special › Other non-globular › Glycosyl hydrolase fold › 0.64 43.0 4.89e-01 81.1% 100.0%
1txkA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 47.0 3.11e-01 93.3% 91.4%
4by2B00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.52 48.0 3.96e-01 100.0% 58.7%
2qc5A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 41.0 2.94e-01 88.9% 63.4%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1692108 210.1.2.2 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › CBAH 0.70 52.0 3.44e-01 76.7% 42.1%
3900097 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.63 43.0 3.73e-01 73.3% 47.4%
3788978 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.60 42.0 3.83e-01 73.3% 55.8%
3237193 3735.1.1.14 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell 0.60 51.0 2.96e-01 96.7% 64.0%
3766391 77.1.1.2 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › FAM194 0.58 50.0 4.13e-01 95.6% 74.4%
3536554 77.1.1.2 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › FAM194 0.57 46.0 4.59e-01 94.4% 84.2%
4114374 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.55 37.0 2.92e-01 72.2% 33.5%
4150297 3735.1.1.9 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › RHS_repeat+DUF6531 0.53 47.0 2.96e-01 100.0% 28.9%
4216435 3735.1.1.12 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › RHS_repeat, DUF6531, TEN_YD-shell 0.53 47.0 3.00e-01 100.0% 18.6%
3944564 3735.1.1.14 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell 0.53 44.0 2.61e-01 95.6% 42.8%
4609923 77.3.1.4 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 0.52 48.0 4.15e-01 100.0% 68.1%
3931562 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.52 47.0 3.47e-01 97.8% 56.9%
3520790 3735.1.1.0 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein 0.51 43.0 2.94e-01 98.9% 25.9%
D4 medium residues 554-607
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ld1A00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.74 57.0 4.07e-01 100.0% 28.7%
3pqhA01 2.20.220.20 Mainly Beta › Single Sheet › Glycosyl hydrolase fold › 0.73 55.0 5.33e-01 100.0% 73.3%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 43.0 3.80e-01 70.4% 87.7%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.63 53.0 3.41e-01 100.0% 54.4%
5h1kA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 52.0 3.23e-01 96.3% 38.6%
4by2B00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.62 54.0 3.93e-01 100.0% 35.5%
3qv0A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.62 52.0 3.73e-01 100.0% 37.4%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.62 41.0 3.92e-01 70.4% 74.6%
3p34A02 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.62 48.0 4.11e-01 100.0% 50.5%
3uv0B00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.60 43.0 3.55e-01 75.9% 63.6%
4g7nA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.59 47.0 3.95e-01 100.0% 50.5%
4g56D00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 49.0 3.15e-01 100.0% 39.6%
4gb7A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.58 47.0 2.85e-01 92.6% 53.9%
3nvnA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 46.0 2.85e-01 98.1% 54.6%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.56 48.0 3.63e-01 98.1% 82.1%
3witA00 2.20.220.20 Mainly Beta › Single Sheet › Glycosyl hydrolase fold › 0.56 47.0 4.47e-01 100.0% 79.7%
3mezD00 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.55 43.0 3.39e-01 96.3% 39.3%
1e69A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 45.0 2.92e-01 94.4% 39.5%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.55 44.0 3.32e-01 94.4% 40.8%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 47.0 2.97e-01 100.0% 39.9%
4immA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 46.0 2.90e-01 100.0% 35.3%
3h74A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 46.0 2.94e-01 96.3% 49.6%
5dn6I00 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.54 37.0 3.41e-01 74.1% 76.0%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 42.0 2.62e-01 92.6% 26.5%
3ozqA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 42.0 3.13e-01 94.4% 56.4%
3dueA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.53 45.0 3.51e-01 100.0% 74.0%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 38.0 3.78e-01 83.3% 88.1%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.66e-01 94.4% 25.6%
3bb7A01 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.51 44.0 3.15e-01 100.0% 78.2%
3eb7A03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.51 41.0 2.91e-01 94.4% 73.1%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 37.0 3.84e-01 90.7% 88.0%
1szzA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.51 43.0 3.01e-01 94.4% 71.9%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 3.90e-01 92.6% 88.2%
2yugA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 37.0 2.82e-01 85.2% 47.1%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4025709 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.79 61.0 5.73e-01 100.0% 69.2%
4609923 77.3.1.4 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 0.69 58.0 4.33e-01 100.0% 37.8%
5643 809.2.1.1 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.67 48.0 4.42e-01 75.9% 88.7%
3764875 77.3.1.1 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › Tcp10_C 0.64 55.0 3.84e-01 100.0% 33.2%
3514632 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.64 54.0 3.28e-01 98.1% 15.0%
3570911 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.64 54.0 3.29e-01 98.1% 16.1%
3577514 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.63 53.0 3.21e-01 98.1% 15.8%
3867654 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.62 54.0 3.85e-01 100.0% 32.9%
3616330 77.3.1.4 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 0.62 53.0 4.06e-01 100.0% 42.2%
3474675 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.62 52.0 3.22e-01 98.1% 15.9%
3991567 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.62 52.0 3.11e-01 98.1% 14.6%
3483545 4291.1.1.0 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein 0.61 51.0 3.10e-01 98.1% 15.1%
3776456 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.60 42.0 3.68e-01 74.1% 48.8%
3922938 5.1.3.25 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid 0.59 50.0 3.19e-01 100.0% 40.3%
5072965 2002.1.1.57 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › URO-D 0.59 41.0 2.53e-01 74.1% 37.7%
5074928 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.59 43.0 4.06e-01 92.6% 66.2%
4965819 5.1.4.667 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_HVO_0234 0.57 47.0 3.13e-01 100.0% 46.0%
3925555 331.23.1.4 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF100_C 0.57 40.0 3.86e-01 88.9% 61.5%
4436563 5.1.4.171 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › HELP+Beta-prop_EML 0.57 48.0 3.01e-01 98.1% 37.8%
3621257 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.57 39.0 3.60e-01 74.1% 100.0%
3994644 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 43.0 2.39e-01 83.3% 31.8%
4488185 3772.1.1.1 ↗ beta sandwiches › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › FecR 0.56 48.0 3.66e-01 100.0% 69.3%
3736837 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.56 46.0 3.84e-01 98.1% 72.4%
3914165 5.1.4.269 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, HELP, Beta-prop_EML 0.56 48.0 2.96e-01 100.0% 32.2%
3300848 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.56 41.0 3.35e-01 92.6% 39.8%
4023063 216.1.1.8 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Knl1_RWD_C 0.55 46.0 3.91e-01 98.1% 71.6%
3717694 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 36.0 3.81e-01 70.4% 88.9%
4368811 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.53 39.0 3.98e-01 92.6% 80.0%
3275404 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 37.0 3.59e-01 75.9% 68.3%
3680446 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.52 42.0 3.20e-01 90.7% 43.0%
3591883 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.52 44.0 2.80e-01 100.0% 52.1%
4011346 3385.1.1.0 ↗ beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 0.52 41.0 3.68e-01 94.4% 78.8%
5027663 244.2.1.11 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › DUF2283 0.51 36.0 3.45e-01 77.8% 63.1%
3627570 5.1.4.297 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, NBCH_WD40 0.51 43.0 2.65e-01 100.0% 33.0%
3420106 5.1.2.29 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DUF1668 0.50 39.0 3.32e-01 98.1% 79.8%
3722558 331.23.1.4 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF100_C 0.50 40.0 3.56e-01 88.9% 63.7%
4384294 2.1.1.60 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.50 32.0 3.61e-01 90.7% 90.0%