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KY000082.1__APD20778.1__X__00080
Bact-VirKY000082.1__APD20778.1__X__00080
Identity
- Accession:
- KY000082 ↗
- Kingdom:
- phage
Quality
92.3
mean pLDDT
Taxonomy
TaxID: 1913570
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-89
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6imjA01 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.85 | 75.0 | 5.51e-01 | 98.7% | 39.4% |
| 4zkdA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 48.0 | 3.44e-01 | 97.4% | 83.9% |
| 3ijmA00 | 3.90.1570.20 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › | 0.52 | 44.0 | 3.69e-01 | 100.0% | 83.6% |
| 5mw8A01 | 3.30.200.110 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Inositol-pentakisphosphate 2-kinase, N-lobe | 0.51 | 37.0 | 3.27e-01 | 94.9% | 52.6% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5031580 | 206.1.3.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M | 0.89 | 72.0 | 5.16e-01 | 100.0% | 33.0% |
| 1245394 | 206.1.3.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M | 0.87 | 81.0 | 5.91e-01 | 100.0% | 42.3% |
| 4029239 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 33.0 | 2.09e-01 | 80.8% | 8.9% |
| 3287028 | 2004.1.1.236 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21,AAA_23 | 0.54 | 44.0 | 3.25e-01 | 93.6% | 77.1% |
| 3220259 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.54 | 37.0 | 2.55e-01 | 74.4% | 71.1% |
| 3990877 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.53 | 38.0 | 3.37e-01 | 84.6% | 52.2% |
| 3479163 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 39.0 | 3.40e-01 | 87.2% | 76.2% |
D2
high
residues 92-198
Domain cluster:
rep: MK256384.1__QBA85097.1__X__00002__D37-130
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14743.13 best | DNA_ligase_OB_2 | 44.9 | 1.30e-11 | 65.4% | 89.4% |