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KY006853.1__APZ81793.1__vBEliSR6L_28__00028

Bact-Vir

KY006853.1__APZ81793.1__vBEliSR6L_28__00028

Identity

Accession:
KY006853 ↗
Kingdom:
phage

Quality

82.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Erythrobacter_phage_vB_EliS_R6L

TaxID: 1913119

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 36-104
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1no1A00 1.10.8.200 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Replisome organizer (g39p helicase loader/inhibitor protein) 0.76 65.0 6.61e-01 98.6% 100.0%
2di3B02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.64 54.0 4.29e-01 98.6% 60.6%
6b5cA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 51.0 4.86e-01 100.0% 98.8%
7wz5A01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.60 51.0 3.97e-01 94.2% 55.6%
6zhiB02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.55 41.0 3.87e-01 79.7% 81.9%
5l3wA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.54 40.0 3.81e-01 92.8% 67.9%
2kdoA02 1.10.10.900 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › SBDS protein C-terminal domain, subdomain 1 0.53 42.0 4.15e-01 91.3% 83.6%
1zu4A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.53 37.0 3.48e-01 85.5% 59.8%
4nftC00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.51 42.0 3.28e-01 100.0% 91.6%
1u5kA02 1.20.1440.120 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Recombination protein O, C-terminal domain 0.51 42.0 3.61e-01 100.0% 64.8%
1zoyB02 1.10.1060.10 Mainly Alpha › Orthogonal Bundle › Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2 › Alpha-helical ferredoxin 0.50 42.0 3.45e-01 94.2% 75.9%
5mv9A01 1.25.40.530 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain 0.50 43.0 3.25e-01 98.6% 69.9%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2391 571.1.1.1 ↗ alpha arrays › Replisome organizer (g39p helicase loader/inhibitor protein) › Replisome organizer (g39p helicase loader/inhibitor protein) › Replisome organizer (g39p helicase loader/inhibitor protein) › G39P_N 0.76 65.0 6.58e-01 98.6% 98.5%
4962314 2003.1.9.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › CoA_transf_3 0.68 49.0 3.06e-01 76.8% 19.0%
4999188 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.67 58.0 5.56e-01 100.0% 96.2%
4989650 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.66 58.0 5.38e-01 100.0% 82.2%
4606468 101.35.1.21 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › DUF494 0.66 52.0 4.79e-01 100.0% 66.7%
4020194 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.65 57.0 5.25e-01 100.0% 77.8%
3259748 3589.1.1.1 ↗ a+b complex topology › RNAi polymerase N-terminal domain › RNAi polymerase N-terminal domain › RNAi polymerase N-terminal domain › RdRP 0.63 53.0 3.81e-01 100.0% 30.9%
4100763 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.63 53.0 5.15e-01 100.0% 92.5%
4016526 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.62 51.0 5.15e-01 100.0% 92.9%
4940788 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.61 46.0 4.30e-01 84.1% 84.4%
3725248 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.60 51.0 5.00e-01 100.0% 97.3%
3245578 5001.1.1.33 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srh 0.59 43.0 3.14e-01 79.7% 56.2%
3670672 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.57 46.0 4.33e-01 100.0% 72.2%
3322236 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.57 49.0 4.79e-01 100.0% 92.0%
5054534 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.55 41.0 3.62e-01 79.7% 78.1%
3409998 7579.1.1.89 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, BD-FAE 0.55 38.0 2.28e-01 73.9% 32.5%
4520782 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.54 38.0 3.54e-01 91.3% 54.7%
3687407 101.11.1.0 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.53 34.0 3.44e-01 87.0% 65.7%
4963666 514.1.1.2 ↗ alpha bundles › YutG-like › YutG-like › YutG-like › PF25945 0.52 40.0 3.25e-01 89.9% 86.0%
3591360 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.51 42.0 4.23e-01 95.7% 91.4%
4948421 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.51 42.0 3.71e-01 98.6% 76.5%
3700820 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.50 43.0 3.99e-01 97.1% 90.0%