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KY006853.1__APZ81798.1__vBEliSR6L_33__00033

Bact-Vir

KY006853.1__APZ81798.1__vBEliSR6L_33__00033

Identity

Accession:
KY006853 ↗
Kingdom:
phage

Quality

70.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Erythrobacter_phage_vB_EliS_R6L

TaxID: 1913119

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 50-123
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.78 70.0 6.00e-01 100.0% 93.2%
1dd5A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.77 69.0 6.07e-01 100.0% 94.5%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.74 53.0 5.33e-01 75.7% 83.8%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.74 52.0 5.16e-01 74.3% 96.2%
1aj3A00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 51.0 4.69e-01 75.7% 56.1%
5nl6B01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 64.0 5.44e-01 100.0% 86.8%
1m62A00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.72 62.0 5.89e-01 97.3% 88.5%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.70 58.0 5.72e-01 91.9% 93.6%
4mh6A00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.69 50.0 3.93e-01 77.0% 36.5%
1ldjA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.68 58.0 5.13e-01 98.6% 82.6%
1z19A01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.68 48.0 4.32e-01 90.5% 55.0%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.67 48.0 4.63e-01 85.1% 65.9%
4nv0A02 1.10.150.340 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain 0.67 43.0 4.24e-01 74.3% 59.8%
3m7gA02 1.10.8.1010 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.66 46.0 4.19e-01 79.7% 55.8%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.66 48.0 4.40e-01 77.0% 91.7%
4egwA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.64 56.0 4.87e-01 100.0% 89.9%
2zgyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 48.0 3.90e-01 79.7% 68.6%
3axjB01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.64 54.0 4.40e-01 100.0% 57.4%
2fcwA00 1.20.81.10 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain 0.64 48.0 4.25e-01 79.7% 90.6%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.64 56.0 5.56e-01 100.0% 97.4%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.63 55.0 5.33e-01 100.0% 91.8%
2ccyA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.63 44.0 3.74e-01 74.3% 44.1%
3fbzA01 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 47.0 4.29e-01 85.1% 60.8%
1nf1A01 1.10.506.10 Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 0.62 36.0 3.49e-01 75.7% 50.6%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.61 47.0 3.69e-01 79.7% 62.1%
4nqfA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.61 48.0 3.83e-01 83.8% 64.1%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.61 53.0 4.22e-01 97.3% 92.6%
4kc9A02 1.20.120.1750 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.60 47.0 3.38e-01 85.1% 67.9%
4ceiA03 6.10.250.2380 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.58 51.0 4.50e-01 98.6% 72.3%
1lq7A00 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.58 37.0 3.83e-01 71.6% 70.1%
5d18A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 51.0 3.76e-01 100.0% 44.1%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.58 40.0 3.69e-01 73.0% 58.6%
8sbeA02 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.58 48.0 3.65e-01 94.6% 88.8%
2ib0A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.57 51.0 4.22e-01 100.0% 95.6%
4b7yD00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.56 48.0 4.50e-01 100.0% 100.0%
1wwmA00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.55 46.0 3.54e-01 94.6% 69.4%
1or7B01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.54 38.0 3.57e-01 77.0% 59.6%
2o7gA00 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.53 39.0 3.71e-01 81.1% 65.9%
1irxA05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 42.0 3.97e-01 93.2% 74.2%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3250261 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.79 56.0 5.19e-01 75.7% 60.0%
3932008 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.76 54.0 5.40e-01 77.0% 73.3%
3334992 103.4.1.8 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KNOX1+KNOX2 0.75 48.0 4.23e-01 78.4% 45.7%
3595205 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.73 51.0 3.61e-01 73.0% 25.5%
5070360 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.72 50.0 3.86e-01 83.8% 34.2%
5005724 3755.3.1.637 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 0.72 49.0 3.38e-01 81.1% 22.1%
4933354 3755.3.1.637 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 0.72 51.0 3.51e-01 86.5% 22.9%
3533419 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.70 51.0 4.21e-01 77.0% 90.4%
3177238 192.4.1.51 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › BCD_RFX 0.70 63.0 5.08e-01 100.0% 92.1%
4033697 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.69 51.0 4.55e-01 78.4% 56.2%
3479529 604.3.1.1 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.69 61.0 5.62e-01 100.0% 86.3%
3409714 604.3.1.1 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.69 59.0 5.45e-01 100.0% 82.0%
4000107 3567.1.1.122 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › BAR 0.68 50.0 3.89e-01 77.0% 39.4%
4146104 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.68 47.0 4.53e-01 71.6% 64.7%
3911608 604.3.1.1 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.68 58.0 5.52e-01 98.6% 86.7%
5029781 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.67 51.0 4.51e-01 79.7% 83.8%
3479953 604.3.1.1 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.67 58.0 5.61e-01 100.0% 92.9%
3580281 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.67 60.0 5.32e-01 100.0% 93.3%
5022014 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.67 45.0 4.06e-01 70.3% 60.0%
3880410 164.1.1.3 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › Get2_like 0.66 57.0 4.91e-01 95.9% 69.6%
4220382 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.65 40.0 3.47e-01 89.2% 41.8%
4012664 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.65 43.0 3.91e-01 73.0% 50.0%
3587523 632.19.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A 0.64 45.0 4.11e-01 74.3% 55.0%
3262871 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.63 43.0 4.33e-01 70.3% 78.7%
4681537 3718.1.1.1 ↗ alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › FliT 0.63 56.0 5.09e-01 100.0% 80.0%
3585209 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.63 55.0 4.54e-01 100.0% 71.1%
4260426 3718.1.1.1 ↗ alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › FliT 0.62 56.0 5.06e-01 100.0% 81.0%
3648452 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 47.0 4.00e-01 82.4% 48.8%
3581266 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.60 51.0 4.59e-01 100.0% 86.4%
5060007 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.60 43.0 3.66e-01 79.7% 88.1%
3947894 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.59 53.0 5.17e-01 100.0% 95.0%
3316280 3718.1.1.13 ↗ alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › KNOX1, KNOX2 0.59 41.0 3.62e-01 79.7% 47.8%
3932690 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.58 51.0 4.83e-01 100.0% 86.7%
2477784 3651.1.1.1 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.57 50.0 4.48e-01 100.0% 82.4%
4589685 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.57 41.0 3.86e-01 79.7% 60.0%
3242442 109.4.1.1141 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF19 0.57 51.0 4.00e-01 100.0% 49.0%
4980796 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.56 44.0 3.70e-01 89.2% 95.7%
3209404 604.1.1.129 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF6604 0.56 46.0 4.19e-01 90.5% 97.0%
4823831 6004.1.1.2 ↗ extended segments › FATC domain › FATC domain › FATC domain › ETC_C1_NDUFA5 0.56 38.0 3.39e-01 78.4% 48.1%
5058104 2011.2.1.0 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like 0.55 45.0 3.02e-01 94.6% 37.9%
4957532 3755.3.1.637 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 0.55 49.0 4.06e-01 98.6% 70.8%
D2 medium residues 131-181
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.69 50.0 4.13e-01 78.4% 73.4%
2fqmA01 6.10.140.830 Special › Helix non-globular › Helix Hairpins › 0.63 45.0 4.70e-01 76.5% 93.5%
3ihjA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.62 45.0 3.15e-01 78.4% 69.5%
1vw4F01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.60 38.0 3.26e-01 78.4% 35.5%
3zq5A03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.56 40.0 2.83e-01 76.5% 65.4%
4g6tB00 6.10.20.120 Special › Helix non-globular › Arc Repressor Mutant, subunit A › 0.56 34.0 3.14e-01 78.4% 43.7%
2i6tA02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.53 43.0 3.23e-01 100.0% 59.9%
3qcpA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 38.0 2.82e-01 86.3% 61.4%
4q0jA03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.50 40.0 2.94e-01 88.2% 60.6%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5024720 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.66 45.0 4.27e-01 74.5% 58.5%
3267362 304.128.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.63 44.0 3.76e-01 74.5% 44.7%
3288081 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.61 44.0 4.12e-01 78.4% 61.5%
4649320 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.60 42.0 3.73e-01 86.3% 50.7%
5012054 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.60 42.0 3.92e-01 78.4% 58.6%
3800293 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 40.0 3.49e-01 78.4% 44.1%
3236725 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.56 36.0 2.38e-01 80.4% 12.7%
3269296 2006.1.6.22 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF5920 0.51 36.0 2.57e-01 80.4% 38.5%