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KY006853.1__APZ81801.1__vBEliSR6L_36__00036

Bact-Vir

KY006853.1__APZ81801.1__vBEliSR6L_36__00036

Identity

Accession:
KY006853 ↗
Kingdom:
phage

Quality

83.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Erythrobacter_phage_vB_EliS_R6L

TaxID: 1913119

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-89
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.73 53.0 4.34e-01 76.3% 68.4%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 50.0 4.70e-01 73.7% 91.1%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 52.0 4.68e-01 85.5% 72.1%
1hyhC02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.64 56.0 4.51e-01 100.0% 98.7%
1sovA02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.63 53.0 4.23e-01 98.7% 99.4%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.60 43.0 3.15e-01 77.6% 30.0%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 40.0 3.22e-01 72.4% 69.3%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 3.69e-01 81.6% 73.2%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 39.0 4.11e-01 75.0% 86.6%
1ewfA02 3.15.20.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 0.54 40.0 2.78e-01 80.3% 50.7%
1vq8T00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 47.0 4.04e-01 100.0% 60.5%
2o8bB04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.52 40.0 3.33e-01 81.6% 61.1%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 41.0 2.87e-01 86.8% 67.2%
2gfgA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.51 39.0 2.98e-01 82.9% 54.5%
1o97D01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 38.0 2.94e-01 82.9% 74.1%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 34.0 2.46e-01 71.1% 46.7%
2hljA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 38.0 3.18e-01 81.6% 97.1%
7vljA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.50 35.0 3.35e-01 73.7% 71.0%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4963650 4.1.1.488 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7346 0.83 52.0 5.98e-01 71.1% 87.3%
3394789 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 53.0 4.73e-01 76.3% 72.7%
4078162 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 50.0 5.10e-01 71.1% 82.4%
1548913 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.72 51.0 3.88e-01 73.7% 64.0%
4251101 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 49.0 4.70e-01 71.1% 74.1%
1436138 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.70 50.0 3.86e-01 75.0% 66.9%
3328647 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.69 51.0 4.97e-01 78.9% 74.1%
3819397 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.69 50.0 4.92e-01 76.3% 81.2%
3281945 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 52.0 4.91e-01 81.6% 85.6%
3232582 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 50.0 4.73e-01 80.3% 69.5%
3173156 4.1.1.344 ↗ beta barrels › SH3 › SH3 › SH3 › PF31193 0.67 50.0 4.97e-01 80.3% 82.5%
3492557 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.67 50.0 4.60e-01 80.3% 64.0%
3981561 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.62 45.0 3.74e-01 77.6% 57.9%
5054535 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.58 47.0 4.14e-01 96.1% 60.0%
4601878 4.1.1.295 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_L26 0.58 47.0 3.88e-01 96.1% 50.8%
2106291 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.57 46.0 3.78e-01 96.1% 48.5%
3704939 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 45.0 4.26e-01 84.2% 100.0%
3624183 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.55 45.0 2.95e-01 92.1% 64.2%
1156974 5.1.9.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › Propeller domain in ABC toxin B component › TcdB_toxin_midN 0.54 38.0 2.63e-01 77.6% 90.7%
3244230 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.53 36.0 2.99e-01 72.4% 84.0%
3743107 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.52 36.0 3.06e-01 73.7% 87.9%
3934036 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.51 37.0 3.24e-01 77.6% 100.0%
4000737 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.51 41.0 3.43e-01 86.8% 70.0%
3789624 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.51 35.0 2.98e-01 72.4% 84.3%