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KY006853.1__APZ81805.1__vBEliSR6L_40__00040
Bact-VirKY006853.1__APZ81805.1__vBEliSR6L_40__00040
Identity
- Accession:
- KY006853 ↗
- Kingdom:
- phage
Quality
87.2
mean pLDDT
Taxonomy
TaxID: 1913119
Cluster
View cluster (7 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-79
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ui3A02 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.73 | 50.0 | 4.61e-01 | 71.1% | 68.4% |
| 4i2oA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 53.0 | 5.27e-01 | 88.2% | 97.5% |
| 1fnnB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 51.0 | 4.72e-01 | 96.1% | 91.3% |
| 4mqvA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 45.0 | 4.78e-01 | 81.6% | 100.0% |
| 1zarA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 49.0 | 4.72e-01 | 94.7% | 91.0% |
| 2ek5B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 46.0 | 4.18e-01 | 86.8% | 67.9% |
| 4mo0A00 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.59 | 46.0 | 4.55e-01 | 85.5% | 88.6% |
| 4mtdD01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 43.0 | 4.19e-01 | 80.3% | 79.5% |
| 1w5sA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 49.0 | 4.53e-01 | 96.1% | 92.2% |
| 4nohA01 | 3.30.70.3060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 41.0 | 4.21e-01 | 72.4% | 83.1% |
| 2xrnB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 43.0 | 4.61e-01 | 81.6% | 95.3% |
| 3m8eA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 47.0 | 4.35e-01 | 93.4% | 83.2% |
| 3pqkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 46.0 | 4.29e-01 | 93.4% | 77.8% |
| 3s95A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 38.0 | 3.70e-01 | 71.1% | 77.3% |
| 6qv3A05 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 41.0 | 3.90e-01 | 78.9% | 100.0% |
| 2a61B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 46.0 | 3.89e-01 | 93.4% | 52.6% |
| 3oopA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 44.0 | 3.81e-01 | 90.8% | 53.0% |
| 2o0yB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 40.0 | 4.26e-01 | 78.9% | 98.5% |
| 5dcmB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 41.0 | 3.83e-01 | 80.3% | 78.6% |
| 3kewB02 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.55 | 39.0 | 3.24e-01 | 75.0% | 84.0% |
| 3u21A00 | 1.10.10.2430 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NFRKB winged helix-like domain | 0.55 | 45.0 | 4.06e-01 | 93.4% | 88.1% |
| 3kihC01 | 2.20.25.510 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.55 | 26.0 | 3.45e-01 | 76.3% | 94.1% |
| 4gvbA00 | 3.30.70.440 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Killer toxin KP6 alpha-subunit | 0.55 | 38.0 | 3.83e-01 | 73.7% | 74.0% |
| 2kgsA01 | 3.40.1520.20 | Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › | 0.54 | 41.0 | 3.71e-01 | 84.2% | 92.7% |
| 3lqkA00 | 3.40.50.1950 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like | 0.53 | 40.0 | 3.11e-01 | 84.2% | 92.8% |
| 4fx5A03 | 1.20.120.1690 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.52 | 41.0 | 3.89e-01 | 92.1% | 85.0% |
| 4v2kA01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.52 | 40.0 | 3.34e-01 | 82.9% | 91.0% |
| 4g09A03 | 1.20.5.1300 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.50 | 28.0 | 3.08e-01 | 94.7% | 67.3% |
| 2eyqA07 | 3.90.1150.50 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain | 0.50 | 39.0 | 3.32e-01 | 90.8% | 52.4% |
ECOD (68)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3423445 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.67 | 57.0 | 5.38e-01 | 97.4% | 85.3% |
| 4976712 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 55.0 | 5.29e-01 | 92.1% | 96.7% |
| 4943120 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 56.0 | 5.12e-01 | 93.4% | 75.0% |
| 1511065 | 101.1.2.6 ↗ | alpha arrays › HTH › HTH › winged helix domain › GntR | 0.66 | 53.0 | 4.72e-01 | 88.2% | 75.9% |
| 5010613 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.65 | 46.0 | 4.94e-01 | 77.6% | 87.7% |
| 4955372 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 53.0 | 4.74e-01 | 93.4% | 90.0% |
| 3242401 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 51.0 | 4.81e-01 | 89.5% | 87.4% |
| 4984732 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 52.0 | 5.06e-01 | 94.7% | 97.7% |
| 3490376 | 309.1.1.6 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C,Peptidase_M16_M | 0.64 | 46.0 | 3.27e-01 | 78.9% | 96.9% |
| 4994373 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.64 | 50.0 | 5.04e-01 | 85.5% | 94.7% |
| 4982701 | 101.1.2.109 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rio2_N | 0.63 | 53.0 | 5.15e-01 | 96.1% | 92.9% |
| 5015083 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 49.0 | 4.87e-01 | 86.8% | 97.5% |
| 3620820 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 49.0 | 4.07e-01 | 89.5% | 57.9% |
| 3587557 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 49.0 | 5.04e-01 | 89.5% | 94.3% |
| 4241356 | 101.1.2.280 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_12 | 0.61 | 52.0 | 4.87e-01 | 96.1% | 89.5% |
| 2106047 | 101.1.2.18 ↗ | alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e | 0.61 | 48.0 | 4.00e-01 | 89.5% | 73.3% |
| 4940567 | 101.1.2.18 ↗ | alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e | 0.61 | 48.0 | 4.05e-01 | 89.5% | 77.0% |
| 4956415 | 101.1.2.18 ↗ | alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e | 0.61 | 50.0 | 3.99e-01 | 93.4% | 69.4% |
| 4026195 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 43.0 | 4.39e-01 | 76.3% | 97.3% |
| 3816427 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.59 | 49.0 | 4.47e-01 | 94.7% | 86.7% |
| 3442602 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.59 | 48.0 | 4.45e-01 | 92.1% | 89.0% |
| 3801001 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 49.0 | 4.03e-01 | 93.4% | 75.9% |
| 4995430 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.59 | 48.0 | 4.56e-01 | 94.7% | 81.1% |
| 4964961 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 46.0 | 4.33e-01 | 88.2% | 85.3% |
| 4999827 | 101.1.2.927 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7347 | 0.59 | 48.0 | 4.49e-01 | 94.7% | 78.6% |
| 5061613 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 43.0 | 4.26e-01 | 82.9% | 94.1% |
| 5019593 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 45.0 | 4.39e-01 | 86.8% | 91.8% |
| 5049535 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 45.0 | 4.52e-01 | 88.2% | 90.0% |
| 5078889 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 47.0 | 4.11e-01 | 93.4% | 63.2% |
| 5079308 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.58 | 48.0 | 4.15e-01 | 94.7% | 60.8% |
| 4928633 | 101.1.2.18 ↗ | alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e | 0.58 | 47.0 | 4.27e-01 | 90.8% | 80.0% |
| 3269517 | 101.1.2.183 ↗ | alpha arrays › HTH › HTH › winged helix domain › MUS81-like_WH | 0.58 | 46.0 | 4.31e-01 | 94.7% | 91.4% |
| 4945934 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.58 | 48.0 | 4.25e-01 | 94.7% | 67.8% |
| 4854145 | 101.1.2.18 ↗ | alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e | 0.58 | 46.0 | 3.96e-01 | 92.1% | 80.7% |
| 4294304 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.58 | 49.0 | 4.13e-01 | 97.4% | 65.2% |
| 5077744 | 101.1.2.927 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7347 | 0.58 | 47.0 | 4.24e-01 | 94.7% | 71.3% |
| 5006819 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.57 | 47.0 | 4.45e-01 | 94.7% | 81.1% |
| 3973067 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 45.0 | 4.66e-01 | 86.8% | 95.7% |
| 5009770 | 101.1.2.181 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM_C | 0.57 | 45.0 | 4.45e-01 | 88.2% | 98.8% |
| 5031515 | 101.1.2.927 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7347 | 0.57 | 47.0 | 4.42e-01 | 94.7% | 86.3% |
| 4013299 | 109.4.1.1304 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_10, TPR_12 | 0.57 | 46.0 | 2.88e-01 | 93.4% | 15.4% |
| 4940863 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 43.0 | 4.26e-01 | 82.9% | 79.5% |
| 4928371 | 101.1.2.927 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7347 | 0.57 | 47.0 | 4.50e-01 | 94.7% | 91.1% |
| 2387843 | 101.1.21.0 ↗ | alpha arrays › HTH › HTH › HTH in T7 RNA polymerase | 0.57 | 45.0 | 3.93e-01 | 88.2% | 57.0% |
| None | — | 0.57 | 46.0 | 4.26e-01 | 93.4% | 95.2% | |
| 3710117 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 46.0 | 4.44e-01 | 93.4% | 83.3% |
| 3802943 | 101.1.2.122 ↗ | alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K | 0.57 | 42.0 | 4.32e-01 | 78.9% | 94.3% |
| 4931665 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 46.0 | 4.62e-01 | 92.1% | 97.3% |
| 4155057 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.56 | 47.0 | 4.40e-01 | 94.7% | 84.2% |
| 4928332 | 101.1.2.150 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_45 | 0.56 | 42.0 | 4.43e-01 | 81.6% | 98.5% |
| 4965164 | 101.1.2.392 ↗ | alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH | 0.56 | 45.0 | 4.25e-01 | 90.8% | 91.6% |
| 4489801 | 306.1.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › Glucose permease domain IIB › Glucose permease domain IIB | 0.56 | 45.0 | 4.62e-01 | 93.4% | 100.0% |
| 3237702 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 45.0 | 4.46e-01 | 94.7% | 87.1% |
| 5029177 | 101.1.2.297 ↗ | alpha arrays › HTH › HTH › winged helix domain › Mrr_N | 0.55 | 45.0 | 4.17e-01 | 93.4% | 94.0% |
| 3602718 | 101.1.2.209 ↗ | alpha arrays › HTH › HTH › winged helix domain › MJ1010-like_2nd | 0.55 | 44.0 | 4.35e-01 | 93.4% | 82.4% |
| 3695115 | 3711.1.1.0 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein | 0.55 | 45.0 | 3.27e-01 | 89.5% | 51.6% |
| 5028701 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 43.0 | 4.45e-01 | 88.2% | 95.7% |
| 5079289 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 44.0 | 4.08e-01 | 92.1% | 66.7% |
| 3920267 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 43.0 | 4.28e-01 | 86.8% | 82.5% |
| 5011299 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 44.0 | 3.95e-01 | 92.1% | 78.3% |
| 3713637 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 47.0 | 4.18e-01 | 98.7% | 90.4% |
| 3631239 | 101.1.2.68 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 | 0.55 | 45.0 | 3.55e-01 | 97.4% | 74.1% |
| 5054239 | 304.57.1.0 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like | 0.54 | 37.0 | 3.70e-01 | 71.1% | 69.6% |
| 5040941 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 43.0 | 4.05e-01 | 92.1% | 97.0% |
| 5049253 | 246.1.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase | 0.53 | 44.0 | 3.13e-01 | 100.0% | 75.8% |
| 4023634 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 43.0 | 3.59e-01 | 94.7% | 66.9% |
| 3822341 | 101.1.2.396 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 | 0.51 | 40.0 | 3.96e-01 | 93.4% | 81.2% |
| None | — | 0.51 | 42.0 | 3.90e-01 | 97.4% | 93.3% |
D2
high
residues 92-259
Domain cluster:
rep: IMGVR_UViG_3300009616_000257-3300009616-Ga0116111_100275611__D486-632
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00398.27 best | RrnaAD | 24.4 | 2.00e-05 | 53.0% | 28.3% |