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KY006853.1__APZ81854.1__vBEliSR6L_89__00089

Bact-Vir

KY006853.1__APZ81854.1__vBEliSR6L_89__00089

Identity

Accession:
KY006853 ↗
Kingdom:
phage

Quality

78.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Erythrobacter_phage_vB_EliS_R6L

TaxID: 1913119

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-60
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 48.0 4.50e-01 98.0% 76.6%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 43.0 4.43e-01 92.2% 97.9%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4324691 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.57 43.0 3.13e-01 88.2% 94.5%
4150431 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.56 42.0 2.61e-01 80.4% 27.8%
5038457 3054.1.1.0 ↗ alpha arrays › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol 0.54 41.0 3.23e-01 88.2% 72.5%
D2 high residues 101-158
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1e7lA02 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.94 65.0 6.75e-01 98.3% 76.4%
2ld7A00 6.10.160.20 Special › Helix non-globular › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.69 47.0 4.05e-01 96.6% 43.6%
2wdqC00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.64 48.0 3.80e-01 81.0% 89.3%
8g0lB01 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 41.0 2.53e-01 79.3% 20.8%
3ce7A00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.55 46.0 4.05e-01 100.0% 61.1%
1nktA02 3.90.1440.10 Alpha Beta › Alpha-Beta Complex › Pre-protein croslinking domain of SecA › SecA, preprotein cross-linking domain 0.55 43.0 3.35e-01 87.9% 39.3%
1lfkA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.55 43.0 2.63e-01 100.0% 13.3%
4c2dA02 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.54 47.0 4.19e-01 100.0% 91.8%
1fp1D02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 42.0 2.84e-01 87.9% 41.3%
2glzA00 3.30.1330.130 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 0.50 43.0 3.16e-01 93.1% 81.9%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5053068 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.93 55.0 6.57e-01 86.2% 87.5%
4428371 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.88 57.0 6.44e-01 93.1% 86.7%
3249598 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.85 60.0 5.60e-01 100.0% 61.4%
3943133 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.85 59.0 6.55e-01 98.3% 93.3%
3568558 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.84 58.0 5.77e-01 98.3% 70.0%
3172891 130.1.1.16 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.83 54.0 5.80e-01 96.6% 78.0%
4959048 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.83 58.0 6.26e-01 96.6% 84.0%
3190964 130.1.1.20 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › HeH 0.83 57.0 5.83e-01 96.6% 74.5%
3254598 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.82 60.0 5.55e-01 100.0% 62.9%
3252664 130.1.1.31 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › RNF34L-like_3rd 0.79 56.0 5.73e-01 100.0% 78.2%
3650342 130.1.1.10 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP30_Sin3_bdg 0.72 52.0 5.55e-01 100.0% 88.0%
3736518 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.71 49.0 4.51e-01 72.4% 84.0%
3797432 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.71 58.0 6.13e-01 87.9% 100.0%
3674675 2007.5.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL 0.64 53.0 3.31e-01 96.6% 44.3%
4989195 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.61 53.0 4.24e-01 98.3% 81.7%
3256882 103.8.1.1 ↗ alpha arrays › RuvA-C › Hypothetical protein AF0491, middle domain › Hypothetical protein AF0491, middle domain › SBDS_domain_II 0.53 39.0 3.69e-01 89.7% 65.7%
3801118 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 46.0 4.47e-01 100.0% 87.7%
4283564 101.8.1.2 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.52 40.0 2.70e-01 81.0% 32.1%
4932613 103.8.1.1 ↗ alpha arrays › RuvA-C › Hypothetical protein AF0491, middle domain › Hypothetical protein AF0491, middle domain › SBDS_domain_II 0.51 37.0 3.56e-01 91.4% 65.7%
3980089 109.16.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › TROVE domain-like › TROVE domain-like › TROVE 0.50 39.0 2.54e-01 89.7% 42.3%