←Back to structures

KY006853.1__APZ81855.1__vBEliSR6L_90__00090

Bact-Vir

KY006853.1__APZ81855.1__vBEliSR6L_90__00090

Identity

Accession:
KY006853 ↗
Kingdom:
phage

Quality

68.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Erythrobacter_phage_vB_EliS_R6L

TaxID: 1913119

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 13-56
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lfkA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.65 47.0 2.76e-01 77.3% 14.7%
1kkmB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 42.0 2.86e-01 100.0% 18.1%
3p3lA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.61 43.0 2.56e-01 77.3% 36.2%
3tqfA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 42.0 2.87e-01 100.0% 19.4%
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 52.0 4.66e-01 100.0% 73.4%
2wiyA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.59 43.0 2.52e-01 79.5% 14.5%
4yzrA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.59 42.0 2.47e-01 77.3% 14.2%
4l0fA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.58 42.0 2.47e-01 79.5% 12.8%
1s1fA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.58 43.0 2.57e-01 86.4% 24.2%
3awmA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.57 44.0 2.58e-01 86.4% 16.0%
5m0nA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.56 40.0 2.38e-01 79.5% 38.1%
6c80A03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.55 41.0 2.82e-01 100.0% 40.7%
1vx4407 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 42.0 3.84e-01 100.0% 94.2%
3sftA00 3.40.50.180 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Methylesterase CheB, C-terminal domain 0.54 38.0 2.64e-01 81.8% 35.4%
3rwlA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.52 41.0 2.42e-01 90.9% 20.3%
4g6tB00 6.10.20.120 Special › Helix non-globular › Arc Repressor Mutant, subunit A › 0.51 34.0 2.95e-01 72.7% 42.3%
4uhiA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.51 40.0 2.38e-01 95.5% 40.4%
1c8iA01 1.10.520.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › 0.51 36.0 2.46e-01 79.5% 28.5%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4939413 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.70 60.0 5.84e-01 100.0% 94.0%
4926913 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.64 48.0 3.25e-01 84.1% 28.0%
4057499 3681.1.1.0 ↗ a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit 0.62 49.0 3.81e-01 100.0% 40.9%
3902139 4.1.1.99 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_10 0.61 51.0 4.46e-01 100.0% 71.4%
3962059 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.60 46.0 2.79e-01 84.1% 22.3%
3957920 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.60 46.0 2.73e-01 84.1% 17.0%
3676962 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.59 44.0 2.66e-01 84.1% 17.1%
3868927 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.58 44.0 2.68e-01 86.4% 21.4%
4244236 3681.1.1.0 ↗ a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit 0.58 45.0 3.61e-01 100.0% 43.6%
3503965 304.8.1.54 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_13 0.56 46.0 3.91e-01 100.0% 90.6%
4397359 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.56 43.0 2.60e-01 86.4% 20.3%
3734034 109.4.1.1720 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N, TPR_IMB1, TPR_IPO5 0.56 39.0 2.13e-01 81.8% 6.8%
3719397 4050.1.1.0 ↗ few secondary structure elements › beta-barrel domain in Capz › beta-barrel domain in Capz › beta-barrel domain in Capz 0.55 44.0 3.89e-01 100.0% 65.8%
3504997 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.54 43.0 3.67e-01 100.0% 89.4%
4856387 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.54 40.0 2.63e-01 84.1% 56.8%
4999374 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.53 40.0 2.72e-01 88.6% 77.5%
4270226 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.51 38.0 3.68e-01 100.0% 72.7%
4942733 2007.1.3.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding 0.51 39.0 2.66e-01 90.9% 56.0%
4655407 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.51 39.0 2.66e-01 86.4% 31.8%
D2 medium residues 68-106
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.79 67.0 6.03e-01 100.0% 70.2%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.75 66.0 4.63e-01 100.0% 50.0%
3cxbB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.74 63.0 4.70e-01 100.0% 40.8%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.74 61.0 5.02e-01 100.0% 64.9%
1x31C02 3.30.70.1520 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Heterotetrameric sarcosine oxidase 0.73 54.0 4.29e-01 82.1% 85.0%
3gr5A02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.72 53.0 4.51e-01 82.1% 89.7%
4g9yA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 46.0 3.13e-01 100.0% 19.1%
3tu3B01 3.30.720.80 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.70 57.0 4.71e-01 97.4% 50.0%
2y3mB01 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.69 52.0 4.25e-01 84.6% 81.8%
4g08A02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.69 53.0 4.46e-01 87.2% 88.6%
2ar5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.69 52.0 3.75e-01 84.6% 91.5%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.69 51.0 3.90e-01 84.6% 37.0%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 56.0 4.53e-01 100.0% 54.2%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.68 49.0 3.83e-01 79.5% 40.2%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.67 54.0 4.02e-01 100.0% 38.5%
6pcoC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 44.0 3.07e-01 100.0% 20.5%
3nroA00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.67 52.0 3.34e-01 97.4% 97.4%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.66 51.0 3.46e-01 87.2% 85.1%
1i3zA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.66 54.0 4.17e-01 100.0% 59.2%
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.66 44.0 3.04e-01 100.0% 22.0%
2pe4A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.66 56.0 3.18e-01 97.4% 72.2%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 45.0 3.02e-01 100.0% 19.7%
4fo0A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.66 54.0 3.63e-01 97.4% 39.2%
2vnuD01 2.40.50.690 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 51.0 3.89e-01 92.3% 43.7%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 53.0 4.08e-01 100.0% 57.7%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.64 51.0 3.91e-01 94.9% 80.2%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 50.0 4.06e-01 100.0% 48.9%
3zm6A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.63 52.0 3.31e-01 100.0% 19.3%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 52.0 4.15e-01 100.0% 43.8%
4xrfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 42.0 2.91e-01 100.0% 19.7%
3f42A00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.61 42.0 3.21e-01 71.8% 39.8%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 43.0 4.08e-01 87.2% 62.0%
6hgcA01 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.61 49.0 3.19e-01 97.4% 24.1%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 45.0 3.39e-01 100.0% 33.7%
1gpqB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.59 42.0 2.91e-01 74.4% 31.2%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.59 39.0 3.80e-01 71.8% 58.7%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 48.0 3.85e-01 100.0% 42.9%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 46.0 3.57e-01 100.0% 38.2%
1mkeA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 45.0 3.21e-01 100.0% 26.4%
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.57 47.0 3.32e-01 100.0% 48.9%
3pieC05 2.170.260.40 Mainly Beta › Beta Complex › paz domain › 0.57 40.0 2.71e-01 74.4% 18.0%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.55 46.0 3.22e-01 97.4% 81.8%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 46.0 2.85e-01 100.0% 38.8%
1tk7A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.54 41.0 4.23e-01 92.3% 91.9%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.54 48.0 4.19e-01 100.0% 70.2%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.53 41.0 2.98e-01 87.2% 93.2%
4akgA08 1.10.472.130 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain 0.53 47.0 3.12e-01 100.0% 48.1%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.52 37.0 3.36e-01 100.0% 59.2%
3f02B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 39.0 3.03e-01 89.7% 72.0%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.52 43.0 3.02e-01 97.4% 38.6%
4zudA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 41.0 2.51e-01 100.0% 13.7%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 36.0 2.61e-01 84.6% 91.1%
2aw4Z00 4.10.830.30 Few Secondary Structures › Irregular › 30s Ribosomal Protein S14; Chain N › Ribosomal protein L31 0.51 35.0 3.16e-01 84.6% 47.1%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3756684 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.77 57.0 3.58e-01 89.7% 15.2%
3584575 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.77 68.0 4.39e-01 100.0% 25.3%
3164102 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.75 62.0 6.04e-01 100.0% 91.1%
3479095 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 58.0 4.19e-01 100.0% 32.2%
3513850 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 59.0 4.53e-01 100.0% 41.1%
3712932 220.1.1.263 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_29 0.71 59.0 3.99e-01 100.0% 26.5%
4402956 3675.1.1.0 ↗ a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain 0.70 54.0 3.64e-01 92.3% 100.0%
None — 0.70 53.0 3.30e-01 87.2% 33.1%
3262203 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 51.0 3.39e-01 79.5% 22.6%
3878134 377.1.1.16 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS 0.69 51.0 4.68e-01 87.2% 60.0%
3398585 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 56.0 4.01e-01 100.0% 30.0%
3258360 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 56.0 4.19e-01 100.0% 35.2%
3705003 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.67 50.0 3.17e-01 84.6% 14.9%
3243842 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 50.0 3.66e-01 84.6% 32.7%
5033276 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.65 44.0 2.97e-01 100.0% 18.5%
2893010 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.64 45.0 4.20e-01 87.2% 57.4%
3689915 109.4.1.1227 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NPHP3_N 0.63 45.0 2.50e-01 79.5% 5.4%
5032509 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.63 54.0 4.66e-01 100.0% 61.5%
3993395 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.63 48.0 4.03e-01 89.7% 81.3%
3285639 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 53.0 2.90e-01 100.0% 8.7%
3258453 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.63 51.0 4.06e-01 100.0% 41.1%
397140 2.2.1.0 ↗ beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins 0.62 50.0 4.07e-01 100.0% 51.1%
4072685 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.62 48.0 4.12e-01 97.4% 54.7%
3548818 5001.1.1.111 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw 0.62 51.0 3.05e-01 94.9% 33.9%
3396958 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.62 52.0 3.96e-01 100.0% 85.0%
4424609 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.62 47.0 4.35e-01 89.7% 66.0%
5018514 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 46.0 3.28e-01 87.2% 60.0%
3948516 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.61 50.0 4.35e-01 97.4% 89.2%
3381554 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.61 44.0 3.42e-01 97.4% 37.5%
3989262 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.61 45.0 4.31e-01 87.2% 70.0%
3299168 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.61 42.0 3.31e-01 94.9% 36.3%
3217638 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 45.0 4.00e-01 100.0% 54.7%
3938908 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 43.0 3.68e-01 87.2% 44.3%
4965851 4100.1.1.9 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF7387 0.60 52.0 4.65e-01 100.0% 72.7%
4944397 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 49.0 4.65e-01 100.0% 82.0%
5012339 244.2.1.11 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › DUF2283 0.60 43.0 3.80e-01 79.5% 91.7%
3371229 241.1.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.59 47.0 3.04e-01 100.0% 37.0%
3934850 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 46.0 3.29e-01 87.2% 29.2%
3789952 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.59 48.0 2.83e-01 94.9% 41.1%
3397680 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 46.0 2.52e-01 92.3% 9.3%
5079728 208.1.1.1 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.58 43.0 2.84e-01 87.2% 17.4%
3927286 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.58 46.0 3.78e-01 92.3% 88.0%
3471598 524.1.1.0 ↗ alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p 0.58 47.0 3.21e-01 100.0% 73.9%
3716928 2008.1.1.107 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.57 47.0 3.03e-01 94.9% 32.3%
3354326 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.57 46.0 4.17e-01 100.0% 66.7%
5065235 101.1.2.738 ↗ alpha arrays › HTH › HTH › winged helix domain › Vir_act_alpha_C 0.57 46.0 2.94e-01 100.0% 18.9%
3350225 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 43.0 2.82e-01 100.0% 63.4%
4583055 316.1.1.11 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › GrpB 0.55 47.0 3.18e-01 100.0% 78.8%
4978264 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.55 42.0 3.16e-01 89.7% 90.5%
4062751 2.1.1.13 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.54 42.0 3.79e-01 92.3% 70.0%
3172490 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 40.0 2.83e-01 89.7% 49.0%
4934352 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.53 42.0 2.77e-01 100.0% 20.0%
4562142 136.1.1.1 ↗ alpha complex topology › Heme-dependent peroxidases › Heme-dependent peroxidases › Heme-dependent peroxidases › peroxidase 0.53 47.0 2.71e-01 100.0% 12.0%
4935682 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 38.0 3.62e-01 92.3% 74.5%
3283415 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.50 31.0 2.73e-01 100.0% 38.3%
D3 medium residues 120-208
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tu3B01 3.30.720.80 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.67 37.0 4.02e-01 85.4% 63.2%
5x6vG00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 37.0 3.25e-01 100.0% 40.2%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 37.0 3.71e-01 73.0% 65.2%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 34.0 3.02e-01 85.4% 44.5%
2lg1A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 34.0 3.18e-01 98.9% 50.4%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 39.0 3.75e-01 80.9% 89.4%
5kolD00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.51 41.0 3.30e-01 85.4% 78.5%
3zm6A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.50 38.0 2.94e-01 83.1% 47.5%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3598207 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 39.0 3.48e-01 88.8% 48.8%
3618504 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.57 31.0 3.62e-01 82.0% 76.7%
4420340 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 31.0 3.61e-01 79.8% 80.0%
3720304 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 31.0 3.87e-01 83.1% 100.0%
3906596 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 34.0 2.78e-01 79.8% 33.5%
4104915 4.1.1.245 ↗ beta barrels › SH3 › SH3 › SH3 › SspH 0.53 29.0 3.41e-01 79.8% 78.3%
5032509 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.53 35.0 3.95e-01 74.2% 92.3%
3266245 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 34.0 3.10e-01 88.8% 49.2%
3549045 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.50 35.0 3.32e-01 82.0% 60.0%