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KY022433.1__APD18881.1__X__00076

Bact-Vir

KY022433.1__APD18881.1__X__00076

Identity

Accession:
KY022433 ↗
Kingdom:
phage

Quality

66.0 mean pLDDT

Taxonomy

TaxID: 1916097

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-85
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hcmA01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.87 71.0 5.23e-01 100.0% 36.2%
4ki9A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.86 70.0 5.11e-01 100.0% 34.4%
3emuA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.86 70.0 5.21e-01 100.0% 37.5%
2g6zA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.85 69.0 5.13e-01 100.0% 36.7%
2i6jA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.84 67.0 4.82e-01 100.0% 32.3%
1yn9B00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.84 70.0 5.03e-01 100.0% 33.1%
2nt2A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.84 68.0 5.12e-01 100.0% 38.0%
2r0bA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.83 68.0 5.00e-01 100.0% 35.8%
2esbA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.82 67.0 4.86e-01 100.0% 33.3%
2j16A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.82 66.0 5.10e-01 100.0% 40.6%
4kyqA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.80 66.0 4.51e-01 100.0% 26.7%
4d3pA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.80 64.0 4.84e-01 100.0% 36.7%
4jmjA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.79 68.0 4.85e-01 100.0% 32.6%
1rykA00 1.10.1470.10 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ 0.75 40.0 3.86e-01 82.0% 47.8%
3rgoA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.75 63.0 4.66e-01 100.0% 36.3%
4lzjA02 1.10.8.1080 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.67 41.0 3.79e-01 83.6% 46.8%
4rjzA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.64 41.0 2.84e-01 72.1% 20.8%
2aw6A02 1.25.40.400 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.62 49.0 3.30e-01 85.2% 23.5%
4o7iA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.61 52.0 3.72e-01 95.1% 78.0%
3rr1B02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.60 49.0 3.32e-01 91.8% 32.9%
3umgA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 47.0 4.51e-01 86.9% 91.5%
6wb9201 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 50.0 3.19e-01 91.8% 25.6%
4xaxB02 1.20.58.1290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain 0.59 45.0 3.82e-01 82.0% 93.9%
3rf7A02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.58 47.0 3.35e-01 100.0% 30.8%
2bpoA04 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.57 47.0 3.57e-01 96.7% 35.8%
5u56A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 51.0 4.13e-01 100.0% 58.0%
1f20A01 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.56 47.0 3.54e-01 96.7% 36.2%
2qtlA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.56 48.0 3.61e-01 98.4% 41.3%
4dqlA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.54 46.0 3.46e-01 98.4% 38.5%
8hbfB01 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.53 46.0 3.37e-01 100.0% 60.8%
3hibA01 1.10.3380.10 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain 0.53 39.0 3.31e-01 85.2% 91.5%
2eh3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 45.0 3.69e-01 100.0% 76.2%
3r0xA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 44.0 3.63e-01 100.0% 71.5%
2xd3A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 44.0 3.13e-01 98.4% 60.3%
5ysqB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.50 39.0 2.62e-01 90.2% 25.7%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3556247 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.87 71.0 5.13e-01 100.0% 33.8%
3785749 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.86 74.0 4.87e-01 100.0% 24.9%
3652902 4230.1.1.1 alpha arrays › DnaD domain › DnaD domain › DnaD domain › DSPc 0.86 57.0 5.44e-01 83.6% 60.0%
3514292 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.85 69.0 5.29e-01 100.0% 40.0%
3259936 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.85 71.0 5.04e-01 100.0% 32.0%
3480122 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.84 70.0 5.38e-01 100.0% 41.5%
3177023 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.83 67.0 4.86e-01 100.0% 32.7%
4000139 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.82 69.0 5.30e-01 100.0% 43.1%
2845479 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.81 73.0 5.39e-01 100.0% 46.8%
3490099 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.81 67.0 4.98e-01 100.0% 36.9%
3897950 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.80 66.0 5.07e-01 100.0% 40.7%
3906674 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.80 65.0 5.63e-01 100.0% 57.9%
3710956 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.80 65.0 4.78e-01 100.0% 34.8%
3599998 2007.2.3.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.78 69.0 5.02e-01 100.0% 39.4%
3261593 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.78 64.0 4.68e-01 96.7% 33.9%
4610227 103.13.1.1 alpha arrays › RuvA-C › C-terminal lid domain of glucokinase regulatory protein › C-terminal lid domain of glucokinase regulatory protein › GKRP-like_C 0.77 44.0 3.98e-01 85.2% 41.7%
3784326 2007.2.3.30 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PF29454 0.75 64.0 4.35e-01 98.4% 25.7%
4391742 103.13.1.1 alpha arrays › RuvA-C › C-terminal lid domain of glucokinase regulatory protein › C-terminal lid domain of glucokinase regulatory protein › GKRP-like_C 0.73 44.0 4.05e-01 83.6% 47.4%
4239182 103.13.1.1 alpha arrays › RuvA-C › C-terminal lid domain of glucokinase regulatory protein › C-terminal lid domain of glucokinase regulatory protein › GKRP-like_C 0.73 42.0 3.97e-01 85.2% 46.7%
4331679 103.13.1.0 alpha arrays › RuvA-C › C-terminal lid domain of glucokinase regulatory protein › C-terminal lid domain of glucokinase regulatory protein 0.71 42.0 3.90e-01 82.0% 46.7%
3578893 4230.1.1.7 alpha arrays › DnaD domain › DnaD domain › DnaD domain › Y_phosphatase 0.68 57.0 5.19e-01 100.0% 69.4%
1144909 2007.6.1.0 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain 0.65 49.0 3.19e-01 83.6% 57.9%
4084514 103.13.1.0 alpha arrays › RuvA-C › C-terminal lid domain of glucokinase regulatory protein › C-terminal lid domain of glucokinase regulatory protein 0.64 40.0 3.65e-01 83.6% 46.3%
4996918 3685.1.1.1 a+b two layers › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › FmdA_AmdA 0.64 51.0 4.64e-01 93.4% 65.0%
4076590 7014.1.1.1 alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.62 45.0 3.95e-01 75.4% 51.1%
3596071 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.61 48.0 4.10e-01 86.9% 72.0%
3491240 2488.1.1.19 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › PF27710 0.60 50.0 3.46e-01 95.1% 27.0%
3210445 3685.1.1.1 a+b two layers › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › FmdA_AmdA 0.59 50.0 4.23e-01 91.8% 69.7%
3685470 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.59 45.0 3.63e-01 85.2% 57.6%
3571093 4.1.1.401 beta barrels › SH3 › SH3 › SH3 › PWP3A-B_C 0.59 48.0 3.80e-01 90.2% 84.8%
3584695 7514.1.1.0 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain 0.58 48.0 3.94e-01 100.0% 52.0%
3507640 2005.1.1.36 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › SLC12 0.56 41.0 3.00e-01 82.0% 27.7%
3601396 7514.1.1.0 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain 0.56 49.0 3.46e-01 100.0% 33.5%
3690420 3685.1.1.1 a+b two layers › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › Putative acetamidase tm0119 C-terminal domain › FmdA_AmdA 0.56 48.0 4.22e-01 95.1% 65.6%
1160074 7514.1.1.1 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.56 47.0 3.55e-01 98.4% 39.5%
3596510 7514.1.1.0 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain 0.55 46.0 3.32e-01 96.7% 30.8%
4936754 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.55 47.0 3.81e-01 96.7% 81.7%
3640677 7514.1.1.1 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.55 46.0 3.56e-01 98.4% 41.2%
3382586 7514.1.1.1 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.55 47.0 3.49e-01 96.7% 35.8%
3254140 7514.1.1.1 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.55 46.0 3.40e-01 96.7% 33.7%
4645406 7514.1.1.1 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.54 47.0 3.49e-01 96.7% 38.6%
3899987 101.1.1.12 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.53 39.0 3.60e-01 83.6% 58.8%
4962094 7523.1.1.8 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_1 0.53 41.0 2.88e-01 86.9% 57.7%
3596031 7514.1.1.0 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain 0.53 45.0 3.38e-01 98.4% 38.7%
3709066 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 46.0 3.56e-01 100.0% 57.9%
5073264 7577.1.1.4 a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Pyridoxal_deC 0.52 42.0 2.66e-01 96.7% 20.7%
3935967 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.52 44.0 2.79e-01 93.4% 89.7%
3612313 109.4.1.17 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin 0.52 43.0 3.52e-01 98.4% 66.2%
4511885 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.51 40.0 3.99e-01 91.8% 100.0%
3394326 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.50 42.0 2.72e-01 96.7% 23.5%