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KY022433.1__APD18884.1__X__00079

Bact-Vir

KY022433.1__APD18884.1__X__00079

Identity

Accession:
KY022433 ↗
Kingdom:
phage

Quality

84.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_J14

TaxID: 1916097

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-93
PDB
Domain cluster: rep: NC_016567.1__YP_004957557.1__VPEG_00064__00064__D4-74
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yy3A02 2.40.10.240 Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like 0.73 44.0 4.28e-01 90.2% 55.6%
2oaiA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.67 48.0 5.09e-01 83.7% 85.0%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.66 32.0 3.76e-01 75.0% 64.2%
2p13A00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.64 49.0 5.08e-01 83.7% 87.1%
2pliA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.64 47.0 4.96e-01 83.7% 85.7%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 40.0 2.62e-01 96.7% 14.7%
2p4pA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.63 48.0 5.02e-01 83.7% 88.1%
2r2zA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.62 48.0 5.00e-01 85.9% 89.3%
3laeA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.62 46.0 4.88e-01 83.7% 88.9%
2o3gA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.62 47.0 5.12e-01 83.7% 97.4%
2nqwA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.60 48.0 4.93e-01 85.9% 89.7%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.60 41.0 3.26e-01 70.7% 68.2%
3ic8A01 3.40.30.110 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.58 37.0 2.93e-01 87.0% 33.3%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 36.0 3.99e-01 85.9% 80.3%
2yfoA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.57 42.0 2.95e-01 77.2% 80.8%
1iucA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.57 44.0 3.05e-01 82.6% 88.1%
1nbwA04 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 42.0 3.77e-01 79.3% 100.0%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 45.0 3.19e-01 90.2% 81.3%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.56 45.0 4.30e-01 88.0% 96.4%
5jozA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 48.0 3.45e-01 98.9% 99.3%
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 45.0 3.80e-01 89.1% 79.5%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 44.0 3.32e-01 87.0% 87.1%
2ea9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 43.0 4.30e-01 83.7% 94.7%
5hy7B02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 43.0 2.96e-01 83.7% 97.5%
3flpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 47.0 3.67e-01 98.9% 77.9%
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.55 46.0 4.08e-01 93.5% 71.5%
4agiA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.54 46.0 3.17e-01 93.5% 66.6%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 33.0 3.88e-01 88.0% 100.0%
5g5tA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 41.0 3.26e-01 84.8% 72.5%
8f5pE01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 41.0 2.70e-01 82.6% 99.0%
7c38B01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.53 44.0 3.04e-01 91.3% 68.4%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 44.0 3.74e-01 96.7% 88.3%
4bg8A01 3.30.420.430 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.52 40.0 3.64e-01 84.8% 92.2%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.51 41.0 3.68e-01 89.1% 85.6%
4pjeE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 4.06e-01 95.7% 78.7%
1o67C00 2.40.33.20 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.51 42.0 3.24e-01 90.2% 54.8%
6pxcA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 43.0 4.21e-01 96.7% 98.1%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.82e-01 89.1% 99.7%
4k3yC00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.50 42.0 2.89e-01 94.6% 92.1%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5014673 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.84 69.0 7.38e-01 89.1% 100.0%
5008209 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.83 67.0 7.11e-01 84.8% 100.0%
5008207 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.82 65.0 6.99e-01 87.0% 96.2%
4958733 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.82 67.0 7.13e-01 85.9% 98.8%
5028250 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.81 65.0 6.19e-01 83.7% 91.4%
5012193 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.75 65.0 4.93e-01 93.5% 50.5%
3603357 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 39.0 4.78e-01 89.1% 98.2%
5025079 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 38.0 4.74e-01 91.3% 98.2%
4990212 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 36.0 4.40e-01 89.1% 94.5%
4348606 4.1.1.440 ↗ beta barrels › SH3 › SH3 › SH3 › PF27165 0.61 40.0 4.54e-01 92.4% 92.3%
3399869 219.1.1.24 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Herpes_teg_N 0.61 52.0 4.04e-01 93.5% 45.5%
80910 217.2.1.1 ↗ a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC 0.61 48.0 5.01e-01 83.7% 89.5%
4008916 223.1.1.103 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE7, PF30448 0.61 45.0 3.00e-01 84.8% 20.0%
4042767 223.1.1.103 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE7, PF30448 0.61 46.0 4.02e-01 85.9% 54.1%
4998870 4.1.1.483 ↗ beta barrels › SH3 › SH3 › SH3 › RRXRR 0.61 36.0 3.72e-01 92.4% 62.4%
4155389 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.59 38.0 3.56e-01 92.4% 52.2%
4995784 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 39.0 4.25e-01 93.5% 82.7%
3482975 223.2.1.7 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.59 43.0 3.90e-01 83.7% 56.8%
4998329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 34.0 4.05e-01 92.4% 94.5%
3572103 220.1.1.74 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.57 40.0 3.59e-01 72.8% 92.6%
3741358 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 41.0 3.05e-01 76.1% 34.5%
4643894 9.1.1.8 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PA_decarbox 0.56 46.0 3.83e-01 88.0% 80.0%
3592181 220.1.1.74 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.56 40.0 3.63e-01 75.0% 89.6%
3463561 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.55 45.0 3.07e-01 92.4% 62.0%
3742051 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 47.0 3.18e-01 92.4% 45.6%
3236918 391.1.1.7 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.55 36.0 3.71e-01 79.3% 68.9%
4091216 3844.2.1.2 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › DUF5081 0.55 47.0 3.62e-01 93.5% 58.0%
3773695 63.1.1.3 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH 0.55 40.0 3.55e-01 77.2% 63.7%
3852105 63.1.1.8 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH, PRKCSH_1 0.55 40.0 3.57e-01 77.2% 63.7%
4309285 3844.2.1.2 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › DUF5081 0.54 46.0 3.66e-01 93.5% 53.5%
4316228 1.1.12.1 ↗ beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.54 46.0 4.38e-01 97.8% 79.0%
4951845 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.53 38.0 4.08e-01 92.4% 90.7%
5060402 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.53 40.0 2.72e-01 79.3% 97.2%
4935741 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 39.0 3.73e-01 79.3% 97.4%
2184 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 42.0 3.02e-01 90.2% 86.8%
3404944 5.1.4.235 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_1st 0.52 43.0 2.83e-01 92.4% 97.0%
5039064 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 43.0 2.91e-01 93.5% 79.5%
3494031 220.1.1.74 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.52 42.0 3.71e-01 89.1% 78.6%
4959306 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 42.0 2.96e-01 92.4% 72.5%
3835828 76.1.1.2 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Jacalin 0.52 36.0 3.48e-01 73.9% 79.1%
4426276 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 37.0 4.13e-01 79.3% 100.0%
5000835 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.51 39.0 4.04e-01 91.3% 90.6%
4011771 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.51 41.0 2.49e-01 92.4% 44.4%
4638794 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.50 42.0 3.85e-01 93.5% 83.2%
4957034 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.50 42.0 2.89e-01 94.6% 83.6%
3579887 5.1.5.62 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_LRRK2 0.50 42.0 3.04e-01 93.5% 61.8%