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KY045851.1__APM00211.1__C5a_1__00001

Bact-Vir

KY045851.1__APM00211.1__C5a_1__00001

Identity

Accession:
KY045851 ↗
Kingdom:
phage

Quality

82.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Catalunyavirus› Pseudoalteromonas_phage_C5a

TaxID: 1916107

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-134
PDB
Domain cluster: rep: IMGVR_UViG_3300028048_000061-3300028048-Ga0256405_1000034366__D3-97
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19670.4 best DUF6173 76.1 3.50e-21 90.4% 81.4%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.73 49.0 4.91e-01 75.0% 68.3%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.71 41.0 5.15e-01 70.2% 100.0%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.64 45.0 5.09e-01 82.7% 100.0%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.63 45.0 5.01e-01 88.5% 100.0%
3g5kA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.62 45.0 3.68e-01 75.0% 80.3%
3ic8A01 3.40.30.110 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.62 39.0 3.25e-01 74.0% 36.2%
3s6pA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.62 45.0 4.11e-01 76.9% 88.0%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 42.0 4.02e-01 71.2% 90.9%
3pieB05 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 37.0 4.42e-01 71.2% 98.4%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 35.0 4.28e-01 70.2% 100.0%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 41.0 3.72e-01 72.1% 80.9%
3l8kA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 39.0 3.68e-01 70.2% 95.2%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 33.0 4.12e-01 71.2% 96.7%
2kdsA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 38.0 4.14e-01 88.5% 84.9%
4jzjC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 31.0 3.52e-01 76.0% 74.3%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 34.0 3.96e-01 71.2% 100.0%
3wasA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 46.0 3.18e-01 99.0% 70.7%
6aqgA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 41.0 3.69e-01 81.7% 95.7%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 41.0 3.70e-01 87.5% 95.3%
1ikpA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 3.20e-01 85.6% 97.8%
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.50 41.0 3.82e-01 91.3% 97.1%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3959531 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 45.0 5.41e-01 73.1% 90.0%
4931822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 38.0 4.65e-01 73.1% 87.7%
4383895 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.65 44.0 3.14e-01 70.2% 31.3%
4041376 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 40.0 4.45e-01 85.6% 86.3%
1102692 206.1.1.30 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Kinase-like 0.61 42.0 2.89e-01 70.2% 33.4%
4426276 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 39.0 4.55e-01 70.2% 95.7%
5031673 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 45.0 4.52e-01 79.8% 86.7%
3975862 220.1.1.104 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Cpta_toxin 0.59 38.0 4.26e-01 79.8% 83.7%
3907200 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.59 41.0 2.48e-01 70.2% 85.5%
3923766 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 42.0 4.05e-01 74.0% 81.7%
3991896 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 41.0 4.34e-01 75.0% 83.2%
3607454 220.1.1.306 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_22 0.55 37.0 3.86e-01 70.2% 84.0%
4031599 101.1.2.584 ↗ alpha arrays › HTH › HTH › winged helix domain › HrcA 0.55 29.0 3.04e-01 95.2% 54.7%
3600929 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 37.0 4.05e-01 72.1% 88.2%
4232558 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.52 26.0 2.71e-01 87.5% 47.0%
4025256 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.52 34.0 3.83e-01 76.0% 88.7%
3254159 11.1.1.820 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-sand_ComC_2nd 0.51 34.0 3.58e-01 71.2% 74.7%
3349135 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 39.0 4.17e-01 87.5% 96.7%