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KY045851.1__APM00213.1__C5a_3__00003
Bact-VirKY045851.1__APM00213.1__C5a_3__00003
Identity
- Accession:
- KY045851 ↗
- Kingdom:
- phage
Quality
82.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Peduoviridae›
Catalunyavirus›
Pseudoalteromonas_phage_C5a
TaxID: 1916107
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 43-142
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3l5iA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 38.0 | 4.08e-01 | 80.0% | 67.0% |
| 3qt2A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 36.0 | 3.74e-01 | 80.0% | 59.8% |
| 4eq3A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 41.0 | 4.18e-01 | 83.0% | 70.4% |
| 3agkA02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.61 | 39.0 | 3.62e-01 | 100.0% | 52.4% |
| 3wxmB02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.60 | 38.0 | 3.54e-01 | 100.0% | 51.6% |
| 1fyhB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 40.0 | 4.13e-01 | 83.0% | 71.1% |
| 3d2fA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 37.0 | 3.82e-01 | 98.0% | 67.7% |
| 1txdA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 33.0 | 3.18e-01 | 100.0% | 45.5% |
| 2b5iB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 41.0 | 4.24e-01 | 87.0% | 79.8% |
| 3qwmA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 35.0 | 3.29e-01 | 99.0% | 47.2% |
| 1egjA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 38.0 | 3.79e-01 | 80.0% | 66.3% |
| 4a2bA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 38.0 | 3.40e-01 | 98.0% | 50.7% |
| 4v2bA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 38.0 | 3.78e-01 | 81.0% | 67.0% |
| 3w57A00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.55 | 43.0 | 4.18e-01 | 91.0% | 74.8% |
| 1uenA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 37.0 | 3.46e-01 | 80.0% | 55.2% |
| 2hr0B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 37.0 | 3.67e-01 | 81.0% | 65.1% |
| 3v6oB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 39.0 | 3.94e-01 | 84.0% | 76.0% |
| 2kltA00 | 2.60.40.2030 | Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain | 0.54 | 40.0 | 3.47e-01 | 79.0% | 69.9% |
| 7uzsX03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 40.0 | 3.88e-01 | 81.0% | 69.6% |
| 3e9tB00 | 2.60.40.2030 | Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain | 0.53 | 37.0 | 3.59e-01 | 80.0% | 63.7% |
| 4npjB01 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.53 | 44.0 | 3.91e-01 | 91.0% | 63.6% |
| 1cjyA01 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.53 | 43.0 | 4.06e-01 | 95.0% | 71.4% |
| 5kfzA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.52 | 41.0 | 3.91e-01 | 89.0% | 84.6% |
| 1ex0A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 39.0 | 3.74e-01 | 81.0% | 70.2% |
| 3fq4B01 | 2.60.40.2030 | Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain | 0.51 | 37.0 | 3.56e-01 | 79.0% | 65.5% |
| 2cjsA01 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.51 | 43.0 | 3.71e-01 | 91.0% | 67.3% |
| 4fx5A01 | 2.60.40.3670 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 39.0 | 3.46e-01 | 81.0% | 67.6% |
| 2d73A03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.51 | 38.0 | 3.66e-01 | 96.0% | 69.9% |
| 5i47B03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.50 | 35.0 | 3.59e-01 | 83.0% | 74.7% |
| 2yrbA01 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.50 | 42.0 | 3.80e-01 | 91.0% | 75.6% |
| 1nxuA02 | 3.30.1370.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain | 0.50 | 35.0 | 3.11e-01 | 73.0% | 94.0% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3592742 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.69 | 36.0 | 3.83e-01 | 92.0% | 56.7% |
| None | — | 0.65 | 40.0 | 2.52e-01 | 76.0% | 11.2% | |
| 5029369 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 40.0 | 4.29e-01 | 81.0% | 72.9% |
| 3879431 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 44.0 | 4.33e-01 | 80.0% | 66.7% |
| 5012088 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.61 | 38.0 | 3.67e-01 | 100.0% | 55.5% |
| 4967947 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.60 | 37.0 | 2.61e-01 | 75.0% | 19.1% |
| 5000524 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.59 | 37.0 | 3.43e-01 | 100.0% | 49.6% |
| 4011588 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.59 | 33.0 | 3.68e-01 | 95.0% | 70.7% |
| 4216863 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 46.0 | 4.89e-01 | 92.0% | 98.8% |
| 3712786 | 3346.1.1.0 ↗ | a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 | 0.57 | 49.0 | 4.12e-01 | 97.0% | 63.4% |
| 3702482 | 2492.1.1.34 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › LmjF365940-deam | 0.56 | 44.0 | 3.70e-01 | 86.0% | 72.2% |
| 4106397 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.56 | 31.0 | 3.51e-01 | 100.0% | 70.7% |
| 3795773 | 11.2.1.25 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PL48 | 0.55 | 45.0 | 3.85e-01 | 94.0% | 53.9% |
| 4987637 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.55 | 39.0 | 2.49e-01 | 97.0% | 14.5% |
| None | — | 0.55 | 39.0 | 2.46e-01 | 100.0% | 13.0% | |
| 3909339 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.55 | 37.0 | 3.75e-01 | 80.0% | 70.0% |
| 3772852 | 11.1.1.239 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG3 | 0.55 | 41.0 | 3.93e-01 | 81.0% | 67.5% |
| 3597363 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 35.0 | 3.22e-01 | 100.0% | 48.9% |
| 3275859 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 43.0 | 3.64e-01 | 86.0% | 89.1% |
| 4967149 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.53 | 38.0 | 2.70e-01 | 97.0% | 22.7% |
| 3726266 | 3363.1.1.0 ↗ | beta sandwiches › avirulence protein AvrPiz-t homologs › avirulence protein AvrPiz-t homologs › avirulence protein AvrPiz-t homologs | 0.53 | 38.0 | 4.02e-01 | 75.0% | 98.9% |
| 3519512 | 317.1.1.1 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E | 0.53 | 47.0 | 3.95e-01 | 99.0% | 62.9% |
| None | — | 0.53 | 38.0 | 2.41e-01 | 98.0% | 13.3% | |
| 3615884 | 11.1.1.1189 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › XRCC1_N | 0.53 | 35.0 | 4.05e-01 | 77.0% | 100.0% |
| 3884299 | 11.1.1.239 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG3 | 0.53 | 40.0 | 3.79e-01 | 81.0% | 69.2% |
| 5001475 | 206.1.3.8 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 | 0.53 | 37.0 | 2.78e-01 | 96.0% | 29.2% |
| 4680521 | 206.1.3.19 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C | 0.52 | 39.0 | 3.03e-01 | 95.0% | 34.2% |
| 3277288 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 38.0 | 3.44e-01 | 80.0% | 56.3% |
| 3535172 | 11.1.1.664 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › THSD1_D2 | 0.52 | 37.0 | 3.60e-01 | 79.0% | 66.4% |
| 4572391 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.52 | 40.0 | 3.41e-01 | 81.0% | 68.1% |
| 3740861 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.52 | 44.0 | 3.85e-01 | 91.0% | 75.9% |
| 3914909 | 11.1.1.239 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG3 | 0.52 | 39.0 | 3.69e-01 | 80.0% | 68.3% |
| 4480160 | 11.1.1.1291 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Tag1_N | 0.51 | 40.0 | 3.44e-01 | 84.0% | 63.6% |
| 3909036 | 11.1.1.1056 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M, A2M_BRD, MG3 | 0.51 | 40.0 | 2.55e-01 | 85.0% | 61.8% |
| 3572231 | 2485.1.1.55 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FAF1 | 0.51 | 47.0 | 3.80e-01 | 100.0% | 68.6% |
| 3492718 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.51 | 37.0 | 3.75e-01 | 77.0% | 98.0% |
| 184563 | 12.1.1.22 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › GH97_C | 0.51 | 37.0 | 3.62e-01 | 96.0% | 68.1% |
| 4065160 | 206.1.3.19 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C | 0.51 | 37.0 | 2.90e-01 | 95.0% | 33.9% |
| 4012064 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 38.0 | 3.15e-01 | 81.0% | 63.7% |
| 5035919 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 36.0 | 3.44e-01 | 80.0% | 64.3% |
| 5017004 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.50 | 38.0 | 3.00e-01 | 95.0% | 37.7% |