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KY045851.1__APM00254.1__C5a_44__00044

Bact-Vir

KY045851.1__APM00254.1__C5a_44__00044

Identity

Accession:
KY045851 ↗
Kingdom:
phage

Quality

72.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Catalunyavirus› Pseudoalteromonas_phage_C5a

TaxID: 1916107

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-147
PDB
Domain cluster: rep: ON615601.1__UTS51982.1__X__00034__D5-121
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12571.14 best Phage_tail_fib 84.6 1.00e-23 100.0% 86.7%
D2 high residues 171-279
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xc8A00 2.60.40.2980 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 57.0 5.50e-01 100.0% 89.3%
2n99A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.61 42.0 4.76e-01 84.4% 100.0%
2l03A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.60 39.0 4.58e-01 82.6% 97.3%
1ywhA01 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.59 41.0 4.63e-01 89.9% 97.5%
1nh2C00 2.30.18.10 Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain 0.55 26.0 3.45e-01 89.9% 92.0%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3589732 4166.1.1.2 ↗ beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Caudo_bapla_N 0.75 70.0 6.15e-01 100.0% 81.3%
5038875 4166.1.1.0 ↗ beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like 0.71 63.0 6.19e-01 98.2% 88.7%
393101 4166.1.1.3 ↗ beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Gp22 0.64 58.0 5.48e-01 100.0% 85.0%
3907467 382.1.1.1 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.63 45.0 4.96e-01 81.7% 94.1%
3754123 382.1.1.2 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP 0.61 45.0 4.97e-01 85.3% 98.8%
3899239 382.1.1.1 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.57 43.0 4.68e-01 85.3% 97.8%
3857127 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.56 40.0 4.46e-01 89.0% 97.6%
3541221 382.1.1.1 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.55 40.0 4.41e-01 87.2% 96.5%
3755463 382.1.1.1 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.55 40.0 4.37e-01 83.5% 92.2%
3688945 11.1.1.644 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Pom152 0.54 38.0 3.81e-01 73.4% 75.7%
3544136 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.52 40.0 4.22e-01 89.9% 92.0%
3243866 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.51 40.0 4.14e-01 83.5% 98.0%
3915149 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.50 39.0 3.71e-01 92.7% 70.0%