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KY056620.1__APD21429.1__P240_21__00021

Bact-Vir

KY056620.1__APD21429.1__P240_21__00021

Identity

Accession:
KY056620 ↗
Kingdom:
phage

Quality

87.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 183-268
PDB
D2 high residues 276-363
PDB
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.72 50.0 5.26e-01 80.7% 79.0%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.69 45.0 4.24e-01 93.2% 54.6%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.68 45.0 4.44e-01 93.2% 63.2%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 40.0 4.35e-01 75.0% 70.7%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 53.0 4.53e-01 94.3% 55.9%
2g30A02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.64 44.0 4.03e-01 90.9% 53.4%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.64 44.0 4.15e-01 79.5% 58.9%
2lmeA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.62 42.0 4.03e-01 81.8% 59.0%
3ecfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 49.0 4.36e-01 86.4% 84.4%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 48.0 4.15e-01 83.0% 57.1%
4xrtA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 45.0 3.88e-01 94.3% 49.3%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.61 54.0 4.65e-01 97.7% 100.0%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 49.0 4.43e-01 87.5% 94.2%
5tgnA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 47.0 4.48e-01 88.6% 96.3%
2uvaG08 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 49.0 3.41e-01 89.8% 77.8%
5evhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 48.0 4.39e-01 89.8% 85.1%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 52.0 4.31e-01 95.5% 56.4%
4hz9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 46.0 4.17e-01 86.4% 97.6%
4n4bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 52.0 3.57e-01 100.0% 46.7%
1h91A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 46.0 3.67e-01 85.2% 42.2%
2w5nA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.58 52.0 3.46e-01 100.0% 43.3%
3qszA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 52.0 4.14e-01 100.0% 57.6%
3mnmA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.57 39.0 3.61e-01 70.5% 73.2%
4mlgG00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 49.0 3.38e-01 97.7% 38.0%
3uoaB02 2.60.40.3360 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 43.0 3.70e-01 81.8% 88.2%
2cztA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 49.0 4.05e-01 97.7% 67.7%
3w7tA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.55 47.0 3.57e-01 100.0% 50.4%
5h9kA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 44.0 3.71e-01 95.5% 98.7%
6t5kC00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.50 42.0 3.15e-01 92.0% 60.3%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1841031 243.19.1.0 a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.95 90.0 8.86e-01 100.0% 93.5%
2549179 243.19.1.0 a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.87 82.0 8.14e-01 100.0% 98.9%
4888729 243.19.1.0 a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.83 76.0 7.15e-01 100.0% 86.8%
3974649 243.19.1.0 a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.72 60.0 6.01e-01 100.0% 88.9%
5014272 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.65 42.0 4.63e-01 73.9% 82.9%
3342595 9.23.1.4 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin 0.64 58.0 4.64e-01 100.0% 72.8%
5045102 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.64 43.0 4.22e-01 93.2% 64.2%
3223253 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.63 49.0 4.40e-01 84.1% 84.8%
4386721 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.61 49.0 4.49e-01 87.5% 84.3%
3616309 5.1.5.236 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_WDR3_1st 0.61 53.0 3.53e-01 100.0% 53.8%
4170432 4998.1.1.1 beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 0.60 51.0 4.52e-01 92.0% 70.4%
3723546 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.59 52.0 3.56e-01 100.0% 39.4%
3277897 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.59 52.0 4.38e-01 97.7% 62.0%
1094910 243.1.1.21 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF3828 0.59 46.0 4.17e-01 86.4% 97.6%
3484000 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 51.0 2.89e-01 100.0% 17.4%
4999882 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.58 50.0 3.51e-01 100.0% 44.6%
4998774 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.58 46.0 2.87e-01 84.1% 26.2%
5080416 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.57 50.0 3.57e-01 100.0% 51.4%
3658474 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 48.0 4.74e-01 100.0% 90.5%
3663455 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.52 45.0 3.23e-01 100.0% 33.4%
3296140 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.51 39.0 2.55e-01 84.1% 19.8%
3626264 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 44.0 3.11e-01 100.0% 40.1%
D3 medium residues 6-160
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21311.4 best Phage_RBD_prop 147.9 5.70e-43 91.0% 51.0%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vsmA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.66 61.0 4.45e-01 100.0% 59.6%
7mhuA01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.65 59.0 4.49e-01 100.0% 59.3%
2rkcA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.64 59.0 4.35e-01 100.0% 58.9%
4d47A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.64 58.0 4.29e-01 100.0% 48.7%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 59.0 4.13e-01 100.0% 66.7%
2qe8A00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.63 59.0 4.50e-01 100.0% 59.9%
1h4iA00 2.140.10.10 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily 0.63 58.0 3.86e-01 100.0% 55.5%
1st8A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.63 58.0 4.48e-01 100.0% 67.0%
4mlgG00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.63 58.0 4.52e-01 100.0% 73.1%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.63 57.0 4.49e-01 100.0% 63.2%
3sc7X01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 57.0 4.43e-01 100.0% 68.5%
4k3yC00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.62 55.0 4.19e-01 96.1% 43.7%
1kb0A01 2.140.10.10 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily 0.61 56.0 3.78e-01 100.0% 55.7%
1inyA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.61 54.0 4.02e-01 96.1% 41.8%
2jkbA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.60 55.0 4.15e-01 100.0% 93.3%
6eufA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 55.0 4.36e-01 100.0% 51.6%
3nqhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 53.0 4.25e-01 100.0% 50.2%
6eugA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 53.0 4.10e-01 99.4% 74.6%
6dnzA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.54 38.0 3.66e-01 71.6% 100.0%
1fuwA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 30.0 3.74e-01 98.7% 91.2%
3r0qA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.53 37.0 3.41e-01 71.6% 100.0%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4032422 5.1.2.14 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Phage_RBD_prop 0.95 92.0 7.03e-01 100.0% 50.0%
2549177 5.1.2.14 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Phage_RBD_prop 0.91 80.0 6.18e-01 100.0% 47.0%
4888728 5.1.2.14 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Phage_RBD_prop 0.85 76.0 6.03e-01 100.0% 51.3%
3508969 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.66 55.0 4.61e-01 96.1% 52.7%
3518499 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.65 59.0 4.72e-01 96.1% 74.0%
195810 5.1.3.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › MRJP 0.63 59.0 4.50e-01 100.0% 59.9%
3603190 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 58.0 3.80e-01 100.0% 42.0%
3514599 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 58.0 4.15e-01 100.0% 63.2%
161402 5.1.5.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ,PQQ_2 0.62 57.0 3.83e-01 100.0% 57.1%
4504291 375.1.1.29 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › SoxD 0.62 23.0 3.62e-01 83.9% 86.7%
4957585 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.62 57.0 4.41e-01 100.0% 54.9%
3448058 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.62 56.0 4.34e-01 100.0% 66.1%
3838251 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 57.0 4.60e-01 100.0% 64.8%
3466098 5.1.4.101 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF1618 0.61 56.0 4.40e-01 100.0% 71.6%
2538925 5.1.3.26 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_2 0.61 56.0 4.26e-01 100.0% 53.4%
4459566 5.1.3.143 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR, BNR_3 0.61 56.0 4.25e-01 100.0% 53.7%
3266673 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 56.0 4.31e-01 100.0% 52.1%
3725091 5.1.5.93 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N 0.60 56.0 3.93e-01 100.0% 50.3%
4015757 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 33.0 2.94e-01 71.0% 39.5%
3954118 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 55.0 4.16e-01 100.0% 49.7%
3961660 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 55.0 4.15e-01 100.0% 66.2%
3611446 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 54.0 4.34e-01 100.0% 71.4%
3812208 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 54.0 3.80e-01 100.0% 35.2%
3490382 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 53.0 4.00e-01 99.4% 59.1%
5056195 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 54.0 4.14e-01 100.0% 50.7%
3718996 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 53.0 3.72e-01 100.0% 46.0%
3351338 5.1.4.43 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 0.58 52.0 3.75e-01 98.1% 52.5%
3681461 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.58 53.0 3.99e-01 100.0% 44.6%
3446031 5.1.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.56 51.0 4.71e-01 100.0% 93.5%
3436392 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.56 52.0 3.97e-01 100.0% 48.4%
3823073 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.56 52.0 3.94e-01 100.0% 63.7%
3782414 243.5.1.0 a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.55 33.0 4.12e-01 71.6% 95.0%
3520126 5.1.4.329 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30693 0.54 49.0 3.77e-01 99.4% 61.7%
3601303 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 49.0 3.64e-01 100.0% 79.4%
3805100 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.51 31.0 2.97e-01 82.6% 50.5%