Back to structures

KY056620.1__APD21470.1__P240_63__00062

Bact-Vir

KY056620.1__APD21470.1__P240_63__00062

Identity

Accession:
KY056620 ↗
Kingdom:
phage

Quality

89.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-67
PDB
CATH (63)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.82 64.0 6.39e-01 100.0% 81.8%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.81 59.0 6.63e-01 95.3% 100.0%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.81 63.0 6.24e-01 100.0% 80.3%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 56.0 5.94e-01 92.2% 94.5%
4m78N00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 61.0 5.97e-01 100.0% 83.1%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 54.0 5.66e-01 92.2% 87.9%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.73 54.0 5.43e-01 92.2% 77.3%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 59.0 5.84e-01 100.0% 88.2%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 49.0 5.40e-01 95.3% 100.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 58.0 5.40e-01 100.0% 73.5%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 54.0 5.61e-01 100.0% 96.5%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 48.0 5.28e-01 98.4% 97.9%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.69 50.0 5.40e-01 96.9% 96.2%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 61.0 6.04e-01 100.0% 94.1%
4emhA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 58.0 6.04e-01 93.8% 100.0%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 50.0 5.20e-01 98.4% 88.1%
2e6nA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 50.0 4.30e-01 100.0% 49.0%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 51.0 5.24e-01 100.0% 88.3%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 60.0 5.84e-01 100.0% 90.1%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 60.0 5.08e-01 100.0% 62.9%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 57.0 5.70e-01 100.0% 95.4%
1b34B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 57.0 5.55e-01 100.0% 86.5%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 50.0 4.87e-01 100.0% 72.6%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.67 52.0 5.38e-01 100.0% 94.8%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 51.0 5.17e-01 98.4% 85.7%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.67 47.0 5.25e-01 92.2% 100.0%
1vx7N01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 51.0 4.73e-01 100.0% 64.7%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 59.0 5.68e-01 100.0% 87.7%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 59.0 5.60e-01 100.0% 88.0%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.66 55.0 5.48e-01 100.0% 89.6%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 48.0 5.26e-01 92.2% 100.0%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.66 58.0 4.29e-01 100.0% 48.6%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.66 47.0 5.03e-01 93.8% 90.7%
5mkiH00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 58.0 5.60e-01 100.0% 91.5%
1d3bB00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 57.0 5.33e-01 100.0% 91.4%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 49.0 5.26e-01 98.4% 100.0%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.65 48.0 5.24e-01 98.4% 100.0%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.64 50.0 5.15e-01 100.0% 91.7%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 47.0 5.05e-01 93.8% 96.2%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.63 46.0 4.80e-01 96.9% 84.7%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 54.0 4.85e-01 100.0% 69.6%
2pmlX01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 44.0 3.58e-01 75.0% 75.8%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.62 55.0 3.82e-01 100.0% 30.5%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.60 51.0 4.90e-01 100.0% 84.4%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 47.0 3.98e-01 98.4% 74.4%
2bujB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 39.0 3.55e-01 73.4% 90.4%
2k3aA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.57 46.0 4.01e-01 100.0% 58.0%
1hczA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 37.0 3.86e-01 70.3% 83.1%
1u3oA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 42.0 4.27e-01 84.4% 93.5%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 46.0 4.49e-01 98.4% 87.1%
1wdiA02 2.40.10.240 Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like 0.54 35.0 3.36e-01 92.2% 56.2%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 44.0 4.46e-01 92.2% 100.0%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 45.0 4.53e-01 96.9% 95.5%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 42.0 2.93e-01 89.1% 37.5%
4yn3A02 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.53 39.0 3.20e-01 82.8% 97.0%
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 44.0 3.77e-01 96.9% 84.5%
1rfeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 36.0 2.93e-01 73.4% 57.4%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.52 39.0 3.13e-01 85.9% 68.5%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 34.0 3.17e-01 73.4% 52.9%
2fr5A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 41.0 3.20e-01 87.5% 43.4%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 46.0 4.00e-01 100.0% 70.8%
2greF02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.51 44.0 4.16e-01 100.0% 80.8%
4jzjC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 44.0 3.80e-01 100.0% 68.3%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5027750 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 59.0 6.30e-01 82.8% 90.9%
4589595 4.1.1.447 beta barrels › SH3 › SH3 › SH3 › PF28065 0.79 66.0 6.59e-01 100.0% 89.2%
5077969 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 66.0 6.14e-01 100.0% 73.8%
4559371 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 63.0 6.38e-01 100.0% 90.5%
5053906 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.77 61.0 6.32e-01 100.0% 91.7%
4079197 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 62.0 5.61e-01 100.0% 67.1%
4282868 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 65.0 6.29e-01 100.0% 85.7%
4270910 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 64.0 6.25e-01 100.0% 85.7%
4293453 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 63.0 5.89e-01 100.0% 75.0%
4221708 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.74 62.0 6.01e-01 100.0% 84.3%
4335951 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 65.0 6.22e-01 100.0% 83.6%
3302818 4.1.1.236 beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.74 53.0 5.59e-01 100.0% 89.1%
4976092 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 65.0 5.73e-01 100.0% 68.9%
3308604 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.72 58.0 5.48e-01 100.0% 74.7%
3302817 4.1.1.362 beta barrels › SH3 › SH3 › SH3 › KOW6_SPT51-2, KOW7_SPT5 0.70 52.0 4.37e-01 100.0% 46.8%
5022491 4.1.1.182 beta barrels › SH3 › SH3 › SH3 › DUF2097 0.70 57.0 5.18e-01 100.0% 67.1%
3502962 4.1.1.89 beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.70 63.0 5.82e-01 100.0% 88.7%
1114686 4.1.1.8 beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.70 49.0 5.18e-01 96.9% 85.7%
4380345 4.1.1.257 beta barrels › SH3 › SH3 › SH3 › Flag1_repress 0.69 60.0 5.49e-01 100.0% 72.9%
4964211 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 50.0 5.45e-01 76.6% 98.0%
3971321 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.69 59.0 5.82e-01 100.0% 89.9%
3231177 4.1.1.333 beta barrels › SH3 › SH3 › SH3 › PF29330 0.69 48.0 5.32e-01 96.9% 96.0%
3931993 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 52.0 5.32e-01 100.0% 88.3%
3281945 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 61.0 5.44e-01 100.0% 72.2%
3558926 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 51.0 4.58e-01 100.0% 57.8%
3328489 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 51.0 4.98e-01 96.9% 74.3%
4545520 4.7.1.7 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › WYL 0.68 60.0 5.49e-01 100.0% 76.5%
3486326 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 51.0 5.39e-01 98.4% 94.5%
3258918 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.67 60.0 5.12e-01 100.0% 62.9%
4485354 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.67 60.0 5.28e-01 100.0% 68.1%
3304627 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 50.0 5.33e-01 100.0% 96.4%
3712219 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.67 53.0 5.32e-01 100.0% 87.7%
3612184 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 51.0 5.23e-01 100.0% 90.0%
3598271 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 51.0 3.83e-01 100.0% 32.4%
4501723 4.8.1.45 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Peptidase_U57 0.66 50.0 5.25e-01 96.9% 94.5%
3279470 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.66 56.0 5.04e-01 100.0% 68.9%
4956443 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 52.0 5.36e-01 100.0% 93.3%
3936926 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 52.0 5.21e-01 100.0% 86.2%
4601386 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 47.0 5.09e-01 98.4% 98.0%
4093836 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 52.0 5.32e-01 100.0% 93.3%
5036498 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.66 51.0 4.87e-01 100.0% 73.3%
3630782 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.66 50.0 3.92e-01 100.0% 37.2%
1549365 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.66 58.0 5.33e-01 100.0% 81.9%
2866962 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.65 55.0 4.78e-01 100.0% 61.1%
3881111 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 50.0 4.49e-01 100.0% 60.0%
3177693 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.64 52.0 3.27e-01 92.2% 25.3%
3457163 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.64 52.0 4.86e-01 100.0% 72.5%
3256432 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 52.0 5.35e-01 100.0% 95.0%
3591224 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 46.0 5.02e-01 96.9% 100.0%
3821920 4.1.1.283 beta barrels › SH3 › SH3 › SH3 › KOW6_SPT51-2 0.63 47.0 5.04e-01 100.0% 96.4%
4256943 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.62 51.0 3.97e-01 100.0% 41.4%
3790784 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.62 47.0 3.09e-01 90.6% 19.6%
5034351 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 48.0 5.10e-01 98.4% 100.0%
4185893 4.1.1.394 beta barrels › SH3 › SH3 › SH3 › SlpA 0.62 42.0 4.27e-01 71.9% 100.0%
3727542 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 52.0 4.74e-01 98.4% 72.2%
3858885 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 46.0 4.87e-01 98.4% 98.2%
4049824 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 50.0 4.17e-01 100.0% 51.3%
3954938 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 49.0 4.95e-01 100.0% 92.3%
5020252 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.60 51.0 4.25e-01 100.0% 52.5%
3585214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 42.0 3.67e-01 84.4% 47.0%
3471771 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 45.0 4.82e-01 100.0% 96.4%
3910727 4.1.1.353 beta barrels › SH3 › SH3 › SH3 › SH3_TNRC18 0.60 47.0 4.76e-01 100.0% 87.7%
3411858 4.1.1.456 beta barrels › SH3 › SH3 › SH3 › BAH, BAHCC1-like_Tudor, SH3_TNRC18 0.59 52.0 3.16e-01 100.0% 21.0%
3488114 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 47.0 3.90e-01 100.0% 48.3%
3684646 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 50.0 4.75e-01 100.0% 78.8%
3429682 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 49.0 4.67e-01 100.0% 81.3%
3467678 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 48.0 4.11e-01 100.0% 57.3%
3219839 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 47.0 3.00e-01 98.4% 26.5%
3933928 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 47.0 3.05e-01 96.9% 25.9%
4261760 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.56 46.0 4.21e-01 100.0% 85.3%
3623819 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 45.0 2.95e-01 95.3% 28.2%
3384583 5.1.4.38 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.54 42.0 2.66e-01 90.6% 36.3%
3480049 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 45.0 2.91e-01 98.4% 28.0%
4138935 4.1.1.241 beta barrels › SH3 › SH3 › SH3 › NifZ 0.54 46.0 4.42e-01 98.4% 97.3%
3895174 206.1.1.76 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1, Pkinase_fungal 0.54 45.0 2.92e-01 98.4% 30.1%
3699188 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 45.0 2.91e-01 96.9% 26.6%
147045 3257.1.1.1 a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.50 35.0 2.61e-01 96.9% 26.1%