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KY065148.1__APD18021.1__X__00009

Bact-Vir

KY065148.1__APD18021.1__X__00009

Identity

Accession:
KY065148 ↗
Kingdom:
phage

Quality

71.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-39
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1hdhA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.76 52.0 4.12e-01 73.0% 36.4%
2n54B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.74 61.0 5.22e-01 100.0% 62.1%
3nvnA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.72 59.0 3.36e-01 94.6% 98.4%
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.72 62.0 4.01e-01 100.0% 71.5%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.71 58.0 3.72e-01 97.3% 81.9%
2ea9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.71 60.0 4.57e-01 100.0% 96.8%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.71 60.0 3.89e-01 100.0% 72.1%
4g7nA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.71 53.0 3.72e-01 83.8% 25.6%
3a2kA03 3.30.465.60 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.71 58.0 4.53e-01 97.3% 90.7%
2p4bB02 3.30.200.100 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain 0.70 57.0 4.37e-01 100.0% 42.9%
1dl5A02 3.55.20.10 Alpha Beta › 3-Layer(bab) Sandwich › Protein-l-isoaspartate O-methyltransferase; Chain: A, domain 2 › Protein-L-isoaspartyl O-methyltransferase, C-terminal domain 0.70 59.0 4.23e-01 100.0% 45.7%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.70 57.0 3.40e-01 100.0% 93.0%
5k19A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.69 56.0 3.29e-01 100.0% 95.5%
3rkgA01 2.40.128.330 Mainly Beta › Beta Barrel › Lipocalin › 0.69 58.0 4.38e-01 100.0% 81.9%
3fmwC02 3.30.70.2450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 53.0 4.34e-01 100.0% 51.3%
3kd4A03 2.60.120.1130 Mainly Beta › Sandwich › Jelly Rolls › 0.64 51.0 3.62e-01 100.0% 39.4%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.63 50.0 4.35e-01 100.0% 100.0%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.63 48.0 3.95e-01 100.0% 46.4%
1vx7H01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.62 51.0 4.03e-01 100.0% 64.7%
3kljA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.62 49.0 3.98e-01 97.3% 51.8%
6inxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.62 48.0 4.15e-01 94.6% 100.0%
2e1bA02 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.61 44.0 3.14e-01 81.1% 75.2%
4lxqB00 3.40.50.12230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 49.0 3.01e-01 100.0% 14.2%
1u04A04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.61 50.0 3.13e-01 100.0% 20.5%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.61 45.0 3.48e-01 86.5% 63.8%
2ktsA01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.61 49.0 3.73e-01 100.0% 98.0%
4fwwA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 48.0 2.76e-01 100.0% 99.8%
7lgjA01 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.60 42.0 2.65e-01 75.7% 12.1%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 47.0 4.41e-01 94.6% 70.2%
1vq8E02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.59 47.0 3.64e-01 97.3% 61.3%
6dw1A00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.58 44.0 2.95e-01 100.0% 32.9%
2o30A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 48.0 3.81e-01 100.0% 73.2%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 44.0 3.18e-01 100.0% 57.5%
1c8nC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 46.0 2.91e-01 100.0% 78.5%
2p8jA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 38.0 2.40e-01 73.0% 30.1%
1k3xA01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.55 44.0 3.11e-01 94.6% 76.2%
3vwcA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 41.0 2.84e-01 86.5% 50.7%
2nuhA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 42.0 3.26e-01 100.0% 97.1%
4iyqA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 42.0 3.25e-01 100.0% 93.5%
1b12A02 2.170.230.10 Mainly Beta › Beta Complex › Signal Peptidase I; Chain: A, domain 2 › 0.54 39.0 3.24e-01 70.3% 35.1%
5gaeG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.54 44.0 3.59e-01 100.0% 74.1%
3rfoA02 3.10.25.10 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › Formyl transferase, C-terminal domain 0.54 42.0 3.28e-01 100.0% 46.7%
3qjlA02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 38.0 2.86e-01 86.5% 68.9%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3500367 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.83 57.0 4.20e-01 70.3% 28.9%
3216869 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.79 67.0 4.25e-01 100.0% 62.6%
4948221 331.1.1.29 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › Fer4_10 0.79 67.0 5.17e-01 100.0% 68.2%
3520126 5.1.4.329 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30693 0.78 67.0 3.86e-01 100.0% 97.8%
3621408 5.1.4.74 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N 0.78 66.0 3.83e-01 100.0% 91.1%
4025559 5.1.4.74 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N 0.77 61.0 3.50e-01 94.6% 80.5%
4998264 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.75 61.0 4.66e-01 91.9% 64.7%
3264012 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.75 64.0 3.66e-01 100.0% 85.3%
4596047 244.1.1.8 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Trp_halogenase 0.75 61.0 4.95e-01 100.0% 53.8%
4130412 3018.1.1.0 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.75 63.0 4.91e-01 100.0% 85.9%
5037187 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.75 62.0 4.73e-01 100.0% 60.0%
3397645 5.1.4.85 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NOL11_N 0.74 60.0 3.55e-01 97.3% 100.0%
3227180 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.74 61.0 3.76e-01 100.0% 23.9%
4448833 3018.1.1.0 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.73 59.0 4.55e-01 94.6% 84.4%
4969674 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.73 62.0 3.61e-01 100.0% 100.0%
4650209 3018.1.1.1 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.73 57.0 4.32e-01 91.9% 77.9%
3642082 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.73 58.0 3.48e-01 100.0% 98.4%
3222457 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.73 57.0 3.52e-01 91.9% 22.2%
3708150 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.72 59.0 3.42e-01 100.0% 97.3%
4030698 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.72 61.0 4.55e-01 100.0% 75.0%
4328415 3018.1.1.0 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.72 62.0 4.78e-01 100.0% 88.2%
3587590 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.72 58.0 4.36e-01 100.0% 36.2%
3727868 4121.1.1.2 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.72 60.0 3.59e-01 100.0% 27.1%
4955758 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.72 58.0 3.52e-01 100.0% 25.2%
4564620 3018.1.1.0 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.71 59.0 4.29e-01 100.0% 67.8%
3228484 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.71 59.0 3.62e-01 100.0% 22.7%
3233005 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.71 57.0 3.50e-01 97.3% 20.4%
4093822 3018.1.1.0 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.71 59.0 4.54e-01 100.0% 84.4%
5010023 223.2.1.60 a+b three layers › Profilin-like › profilin-like › profilin-like › DUF2173 0.71 59.0 4.29e-01 100.0% 75.5%
4441621 3943.1.1.3 beta sandwiches › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › flgK_1st_1 0.71 58.0 4.52e-01 100.0% 68.9%
3224107 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.70 58.0 3.33e-01 100.0% 98.1%
4286824 3018.1.1.1 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.70 54.0 4.20e-01 91.9% 82.2%
3898349 4121.1.1.2 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.69 59.0 3.61e-01 100.0% 29.8%
4565630 3018.1.1.1 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.69 55.0 4.28e-01 94.6% 80.0%
3607176 101.17.1.4 alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › HU-CCDC81_euk_2 0.69 49.0 3.85e-01 75.7% 40.2%
4162390 4121.1.1.2 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.69 58.0 3.48e-01 100.0% 28.2%
4355701 4121.1.1.2 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.69 58.0 3.48e-01 100.0% 27.9%
4301925 3018.1.1.1 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.69 54.0 4.24e-01 91.9% 85.9%
4099392 3018.1.1.1 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.69 55.0 4.22e-01 94.6% 78.9%
5080350 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.69 56.0 3.34e-01 100.0% 98.8%
3368299 4121.1.1.2 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.69 57.0 3.44e-01 100.0% 27.1%
3805835 4121.1.1.2 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.69 58.0 3.47e-01 100.0% 26.8%
4157978 3018.1.1.1 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.68 53.0 4.16e-01 91.9% 87.1%
4587906 3018.1.1.1 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.68 56.0 4.19e-01 97.3% 76.0%
3479119 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.67 57.0 3.85e-01 97.3% 44.4%
3266341 4121.1.1.2 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.67 56.0 3.44e-01 100.0% 30.0%
4388719 3018.1.1.1 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.66 53.0 4.10e-01 94.6% 83.3%
3281771 9.1.1.4 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META 0.66 56.0 4.06e-01 100.0% 92.7%
3586307 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.66 57.0 3.92e-01 100.0% 47.7%
4195481 3018.1.1.1 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.65 53.0 4.12e-01 94.6% 83.3%
3296049 4121.1.1.2 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.65 54.0 3.37e-01 100.0% 33.0%
3949940 319.1.1.4 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.65 47.0 3.71e-01 81.1% 91.8%
4240325 3018.1.1.1 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.64 50.0 3.89e-01 91.9% 82.2%
3215907 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 53.0 3.17e-01 94.6% 17.0%
3969266 3018.1.1.1 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.64 50.0 3.88e-01 97.3% 74.0%
5054626 318.1.1.0 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.63 52.0 3.91e-01 97.3% 59.0%
3670391 4121.1.1.2 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.63 51.0 3.05e-01 97.3% 21.0%
3248985 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 42.0 2.95e-01 75.7% 40.0%
4668700 270.1.1.2 beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C 0.60 49.0 3.65e-01 100.0% 47.2%
3228995 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.59 49.0 2.70e-01 94.6% 7.0%
4928207 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.59 50.0 4.01e-01 100.0% 84.0%
5030534 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.58 49.0 3.99e-01 100.0% 78.7%
4353397 4121.1.1.2 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.58 49.0 2.97e-01 100.0% 23.0%
5028349 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.58 48.0 3.36e-01 94.6% 46.7%
5077618 304.51.1.1 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C 0.58 41.0 2.92e-01 75.7% 48.8%
4351418 270.1.1.2 beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C 0.55 43.0 3.38e-01 100.0% 47.0%
4174179 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.54 44.0 4.05e-01 94.6% 74.0%
3502221 304.9.1.93 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1, PF27577 0.53 40.0 2.99e-01 100.0% 43.8%