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KY065149.1__APD18159.1__X__00035

Bact-Vir

KY065149.1__APD18159.1__X__00035

Identity

Accession:
KY065149 ↗
Kingdom:
phage

Quality

87.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-48_122-171
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17212.10 best Tube 28.9 1.50e-06 53.1% 27.8%
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xxiA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.64 45.0 3.91e-01 71.9% 49.7%
2p0vA01 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.64 51.0 3.28e-01 84.4% 55.0%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.63 41.0 4.36e-01 70.8% 74.4%
1kn1B00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.63 43.0 3.67e-01 70.8% 52.8%
4kw3A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.62 49.0 3.58e-01 85.4% 62.4%
4eadA02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.61 48.0 3.69e-01 85.4% 73.8%
5xtck00 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 44.0 4.46e-01 76.0% 88.7%
2a9uA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.61 43.0 3.84e-01 100.0% 54.8%
7zm7601 1.20.120.1200 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ 0.60 43.0 3.63e-01 76.0% 44.3%
4i9cA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 43.0 3.27e-01 94.8% 33.9%
2d2mD00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 46.0 4.00e-01 86.5% 90.3%
7qocA01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.57 47.0 3.79e-01 89.6% 72.7%
2nrlA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 48.0 4.22e-01 92.7% 94.5%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 46.0 4.45e-01 89.6% 76.8%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.57 42.0 4.68e-01 93.8% 100.0%
2olpA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 47.0 4.10e-01 92.7% 90.7%
6bmeA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 46.0 4.24e-01 91.7% 95.3%
1oj6A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 45.0 3.94e-01 89.6% 93.9%
2qf9A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.55 47.0 4.08e-01 96.9% 91.0%
1t6jA03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.55 46.0 4.54e-01 95.8% 87.4%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.55 48.0 4.62e-01 97.9% 89.1%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.54 45.0 4.03e-01 91.7% 90.6%
2qksA01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 42.0 4.08e-01 100.0% 75.5%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 45.0 3.91e-01 91.7% 94.6%
1b0bA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 43.0 3.81e-01 87.5% 92.2%
1a00B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 44.0 3.86e-01 89.6% 91.8%
3bt5A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 45.0 3.96e-01 96.9% 91.4%
4g9qA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.53 45.0 3.30e-01 90.6% 52.1%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 43.0 3.83e-01 89.6% 90.8%
2ggfA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 37.0 3.35e-01 96.9% 51.8%
3hyuA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 43.0 3.81e-01 89.6% 90.8%
8gf5C01 3.30.70.470 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 45.0 4.06e-01 99.0% 97.9%
1cqxA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 44.0 3.84e-01 92.7% 86.0%
1gcvB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 43.0 3.90e-01 90.6% 92.6%
1dlcA01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.52 47.0 3.58e-01 100.0% 66.4%
6dlzA01 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.52 45.0 3.64e-01 93.8% 94.5%
2aw6A02 1.25.40.400 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 38.0 2.89e-01 78.1% 43.9%
2bk9A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 43.0 3.70e-01 94.8% 75.2%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3062928 4275.1.1.0 alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like 0.97 94.0 7.12e-01 100.0% 85.2%
4873531 4275.1.1.6 alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Tube 0.95 92.0 7.17e-01 100.0% 91.1%
4843675 4275.1.1.6 alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Tube 0.93 73.0 6.19e-01 81.2% 99.3%
3090881 4275.1.1.0 alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like 0.92 87.0 6.65e-01 100.0% 84.8%
5082459 4275.1.1.0 alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like 0.77 68.0 6.71e-01 94.8% 97.0%
3871639 230.5.1.0 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.68 45.0 4.84e-01 72.9% 80.0%
3495843 1203.1.2.0 alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 0.67 50.0 3.97e-01 79.2% 70.3%
4826576 150.1.1.5 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF305 0.65 47.0 4.96e-01 76.0% 98.8%
3587011 604.39.1.23 alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › Hpre_diP_synt_I 0.64 54.0 4.45e-01 92.7% 74.3%
3407641 106.1.1.8 alpha arrays › Globin-like › Globin-like › Globin-like › HisK-N-like 0.64 44.0 3.76e-01 70.8% 45.8%
3735746 109.4.1.356 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.64 47.0 3.01e-01 77.1% 17.3%
5038239 3843.1.1.31 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q3 0.63 45.0 5.00e-01 75.0% 94.7%
3190824 166.1.1.0 alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C 0.62 43.0 4.69e-01 72.9% 90.7%
4995044 1076.1.1.0 alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related 0.62 50.0 3.85e-01 88.5% 71.4%
3736646 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 49.0 3.22e-01 85.4% 39.3%
4329065 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.60 49.0 5.20e-01 96.9% 97.6%
3686668 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.60 52.0 4.42e-01 96.9% 90.0%
4020908 180.1.1.0 alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase 0.59 49.0 4.18e-01 92.7% 55.0%
3601904 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.59 52.0 4.66e-01 100.0% 96.3%
4025852 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.58 49.0 4.56e-01 93.8% 83.2%
3344801 601.1.2.66 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › CytochromB561_N 0.58 39.0 3.76e-01 89.6% 60.0%
4074084 3579.1.1.6 extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › MbhD+MbhE 0.58 44.0 3.55e-01 86.5% 41.1%
5003284 3579.1.1.0 extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J 0.58 45.0 3.79e-01 83.3% 49.4%
1712709 148.1.3.45 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DYN_lid 0.57 47.0 4.29e-01 89.6% 91.5%
3513473 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.57 46.0 4.04e-01 90.6% 56.7%
3898876 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.57 48.0 4.20e-01 92.7% 94.5%
3583686 148.1.3.45 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DYN_lid 0.57 46.0 4.16e-01 90.6% 89.6%
3682600 109.4.1.359 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exo70_C 0.55 51.0 3.86e-01 100.0% 90.2%
3686313 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 46.0 3.42e-01 93.8% 34.3%
3510492 604.12.1.60 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Hpre_diP_synt_I 0.55 42.0 4.20e-01 96.9% 80.0%
5008556 3843.1.1.0 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.55 40.0 4.28e-01 88.5% 88.2%
3941077 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.55 46.0 4.08e-01 92.7% 93.6%
4989750 633.6.1.1 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 0.54 48.0 4.08e-01 96.9% 85.2%
3513849 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.54 48.0 4.37e-01 100.0% 79.2%
3704156 283.1.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 0.53 45.0 3.63e-01 91.7% 61.6%
3284 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.53 43.0 3.83e-01 89.6% 90.8%
5075806 4995.1.1.1 alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.52 40.0 4.28e-01 96.9% 96.2%
3706567 109.4.1.1164 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › zf-MYND 0.52 44.0 3.16e-01 89.6% 39.2%
3709846 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 44.0 3.65e-01 89.6% 63.7%
3607719 633.24.1.0 alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain 0.52 39.0 4.12e-01 94.8% 92.9%
4433130 106.1.1.7 alpha arrays › Globin-like › Globin-like › Globin-like › Protoglobin 0.51 43.0 3.67e-01 95.8% 79.4%
3973803 109.3.1.18 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › DUF2157 0.50 45.0 3.34e-01 100.0% 41.6%
3723714 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 44.0 3.28e-01 96.9% 43.7%
D2 high residues 52-116
PDB
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wy2A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 41.0 4.05e-01 98.5% 72.6%
1sixA00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.52 43.0 3.45e-01 100.0% 60.1%
5f29B00 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.52 39.0 3.91e-01 100.0% 81.7%
4owkE00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 41.0 3.37e-01 95.4% 96.3%
2omlA02 3.30.70.1560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Alpha-L RNA-binding motif 0.50 37.0 3.28e-01 83.1% 78.1%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3090881 4275.1.1.0 alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like 0.86 77.0 5.31e-01 100.0% 31.8%
4873531 4275.1.1.6 alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Tube 0.83 70.0 5.05e-01 100.0% 33.5%
4829264 4275.1.1.6 alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Tube 0.82 74.0 5.24e-01 100.0% 37.8%
4843675 4275.1.1.6 alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Tube 0.80 67.0 5.13e-01 100.0% 41.1%
3062928 4275.1.1.0 alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like 0.77 65.0 4.62e-01 100.0% 31.1%
2722164 4275.1.1.6 alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Tube 0.76 64.0 4.54e-01 100.0% 31.3%
3478729 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 3.67e-01 100.0% 88.6%
4498857 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.53 41.0 3.62e-01 100.0% 55.2%
4503813 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.52 40.0 3.78e-01 100.0% 68.2%
3802359 11.1.5.90 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › TPD1_C 0.52 43.0 3.90e-01 100.0% 97.0%
4981634 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.52 39.0 3.67e-01 100.0% 67.1%
3934438 389.2.1.0 few secondary structure elements › EGF-like › Serine protease inhibitors › Serine protease inhibitors 0.52 35.0 3.81e-01 84.6% 92.0%
3387126 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.51 38.0 3.66e-01 100.0% 70.0%
3923975 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 3.71e-01 100.0% 81.9%