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KY065464.1__APD22343.1__IPP23_00002__00002

Bact-Vir

KY065464.1__APD22343.1__IPP23_00002__00002

Identity

Accession:
KY065464 ↗
Kingdom:
phage

Quality

93.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_IPP23

TaxID: 1916163

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-72
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4uobA01 1.10.1670.10 Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 0.59 42.0 3.60e-01 77.3% 66.4%
1aa7A02 1.10.10.180 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Influenza matrix protein M1, N-terminal subdomain 2 0.57 44.0 4.26e-01 86.4% 82.1%
4ga0A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 47.0 3.76e-01 100.0% 50.3%
3bhwA00 1.10.3540.10 Mainly Alpha › Orthogonal Bundle › fold of a uncharacterized protein from magnetospirillum magneticum › uncharacterized protein from magnetospirillum magneticum domain 0.54 44.0 3.38e-01 100.0% 96.7%
2hqrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 3.43e-01 80.3% 64.2%
4hdoA02 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.53 40.0 3.44e-01 86.4% 63.9%
4kwaB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 43.0 3.29e-01 100.0% 80.2%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.53 38.0 3.40e-01 75.8% 79.3%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4025103 109.4.1.142 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CSN8_PSD8_EIF3K 0.64 54.0 4.40e-01 100.0% 53.6%
3377601 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 41.0 4.20e-01 78.8% 83.1%
3276527 109.4.1.526 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Atx10homo_assoc 0.56 46.0 3.24e-01 100.0% 56.2%
3415587 3090.1.1.1 ↗ few secondary structure elements › Microplusin › Microplusin › Microplusin › DM4_12 0.54 39.0 3.73e-01 77.3% 100.0%
3186746 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.51 35.0 3.59e-01 72.7% 95.3%
3859662 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.51 35.0 2.12e-01 72.7% 75.7%
D2 high residues 82-159
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qndA00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.73 53.0 4.92e-01 75.6% 76.3%
4l7mA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.71 62.0 4.32e-01 98.7% 47.9%
4u2xF00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.68 60.0 4.58e-01 97.4% 46.3%
3c5wA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.67 57.0 4.18e-01 98.7% 42.1%
4rngC00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.66 47.0 4.64e-01 75.6% 83.1%
4x5mA00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.65 46.0 4.54e-01 75.6% 81.4%
3a52A01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.54 43.0 2.89e-01 87.2% 27.9%
3smtA02 3.90.1420.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain 0.53 45.0 3.65e-01 100.0% 97.0%
3mc1A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 33.0 3.52e-01 100.0% 77.6%
7sf8A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.50 42.0 3.04e-01 96.2% 80.1%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3368681 109.4.1.935 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TOR1L1_N 0.72 64.0 4.14e-01 98.7% 42.0%
2771008 109.4.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm 0.71 64.0 4.06e-01 98.7% 25.3%
3749381 109.4.1.409 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm,IBB,Arm_3 0.70 63.0 3.80e-01 100.0% 27.0%
3671838 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 63.0 4.65e-01 98.7% 49.2%
3692083 608.1.1.0 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like 0.59 51.0 3.65e-01 100.0% 41.6%
3591699 138.1.1.0 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.54 40.0 3.72e-01 79.5% 77.0%