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KY065464.1__APD22361.1__IPP23_00020__00020
Bact-VirKY065464.1__APD22361.1__IPP23_00020__00020
Identity
- Accession:
- KY065464 ↗
- Kingdom:
- phage
Quality
88.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-80
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4a18X01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.79 | 54.0 | 5.36e-01 | 71.1% | 73.4% |
| 2fh5A01 | 3.30.450.60 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.62 | 51.0 | 4.37e-01 | 90.8% | 67.2% |
| 6cc0A01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.61 | 50.0 | 3.88e-01 | 89.5% | 78.7% |
| 2yztA00 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 39.0 | 4.21e-01 | 93.4% | 77.3% |
| 1ywhC03 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.59 | 47.0 | 4.49e-01 | 98.7% | 75.0% |
| 2l03A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.58 | 41.0 | 4.16e-01 | 98.7% | 77.0% |
| 2j3tD01 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.57 | 46.0 | 3.88e-01 | 90.8% | 73.1% |
| 1o22A00 | 3.90.1000.10 | Alpha Beta › Alpha-Beta Complex › Orphan Protein Tm0875; Chain: A; › Hypothetical protein TM0875 | 0.56 | 42.0 | 3.39e-01 | 81.6% | 96.6% |
| 1xmbA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 44.0 | 4.02e-01 | 97.4% | 65.3% |
| 2ypyA00 | 3.30.70.390 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain | 0.55 | 43.0 | 3.64e-01 | 88.2% | 89.6% |
| 6c62A00 | 3.90.1300.10 | Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain | 0.53 | 45.0 | 2.84e-01 | 100.0% | 80.3% |
| 2yq1C00 | 3.30.70.390 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain | 0.52 | 40.0 | 3.46e-01 | 86.8% | 90.8% |
| 6qmmA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 45.0 | 3.29e-01 | 100.0% | 37.4% |
| 2vzyC00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 45.0 | 3.44e-01 | 100.0% | 62.4% |
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.51 | 30.0 | 3.40e-01 | 86.8% | 77.2% |
| 1wjwA01 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.51 | 36.0 | 3.53e-01 | 86.8% | 67.1% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4996552 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.84 | 60.0 | 5.77e-01 | 73.7% | 68.2% |
| 4990637 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.83 | 57.0 | 5.56e-01 | 71.1% | 67.5% |
| 4951473 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.81 | 56.0 | 6.12e-01 | 71.1% | 85.7% |
| 3278704 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.59 | 43.0 | 4.27e-01 | 81.6% | 72.5% |
| 4001313 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.59 | 48.0 | 3.73e-01 | 90.8% | 92.6% |
| 3287138 | 303.1.1.1 ↗ | a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC | 0.59 | 50.0 | 4.00e-01 | 96.1% | 60.6% |
| 3302989 | 223.1.1.79 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_NLP | 0.58 | 51.0 | 3.92e-01 | 98.7% | 82.9% |
| 3701193 | 223.2.1.8 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin | 0.58 | 47.0 | 3.85e-01 | 89.5% | 71.5% |
| 3243753 | 223.2.1.8 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin | 0.55 | 45.0 | 3.73e-01 | 90.8% | 75.0% |
| 5040055 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.54 | 29.0 | 3.66e-01 | 72.4% | 100.0% |
| 3948980 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.52 | 38.0 | 3.29e-01 | 98.7% | 48.3% |
| 5077991 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.51 | 36.0 | 3.58e-01 | 73.7% | 93.8% |
| 3165390 | 304.24.1.36 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › SPOR | 0.51 | 37.0 | 3.74e-01 | 80.3% | 98.8% |
| 4371656 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.51 | 43.0 | 4.02e-01 | 93.4% | 92.6% |
| 5070158 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.51 | 42.0 | 2.78e-01 | 93.4% | 62.1% |
| 3714160 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.50 | 35.0 | 3.38e-01 | 88.2% | 62.2% |
| 3451705 | 331.4.1.2 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF | 0.50 | 41.0 | 3.45e-01 | 97.4% | 51.4% |