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KY065497.1__APD24135.1__IPP61_00025__00025

Bact-Vir

KY065497.1__APD24135.1__IPP61_00025__00025

Identity

Accession:
KY065497 ↗
Kingdom:
phage

Quality

90.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-73
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02920.22 best Integrase_DNA 84.7 4.50e-24 96.2% 70.4%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b69A00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.93 83.0 7.45e-01 96.2% 72.5%
1nqzA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.68 40.0 2.74e-01 80.8% 18.1%
2dlbA00 3.10.20.330 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function YopT 0.67 34.0 3.07e-01 78.8% 37.1%
1nz8A00 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.66 35.0 2.68e-01 84.6% 21.8%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.66 51.0 3.60e-01 100.0% 27.3%
1jv2B04 4.10.1240.30 Few Secondary Structures › Irregular › Hormone receptor fold › 0.64 39.0 3.31e-01 73.1% 37.2%
2pstX00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.64 37.0 3.52e-01 98.1% 45.9%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 40.0 2.88e-01 96.2% 23.7%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 39.0 3.86e-01 96.2% 65.5%
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 39.0 2.55e-01 86.5% 18.8%
2zgyA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 43.0 3.09e-01 94.2% 48.3%
6nvxB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.54 37.0 3.30e-01 71.2% 72.7%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 3.40e-01 92.3% 88.3%
3f02B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 41.0 3.35e-01 84.6% 58.0%
2h1eA02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 36.0 3.58e-01 96.2% 69.1%
4jn3A01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.52 44.0 3.01e-01 100.0% 69.8%
4wksC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.52 38.0 3.42e-01 78.8% 81.3%
5mz2I00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.51 37.0 2.72e-01 76.9% 45.3%
2e7zA01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.51 31.0 3.05e-01 71.2% 52.6%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 37.0 2.43e-01 86.5% 18.3%
4be3A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 37.0 2.43e-01 88.5% 91.0%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3587237 252.2.1.2 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Integrase_DNA 0.96 90.0 7.81e-01 100.0% 69.3%
7726 4325.1.1.1 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.70 51.0 4.97e-01 100.0% 70.7%
3620976 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.69 42.0 2.76e-01 100.0% 14.4%
4407937 3957.1.1.2 a+b two layers › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 › DUF4611 0.65 57.0 5.45e-01 98.1% 88.3%
3457354 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.64 40.0 2.91e-01 98.1% 22.1%
3235660 304.151.1.4 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › PF25899 0.63 50.0 3.88e-01 92.3% 77.6%
3426675 252.1.1.1 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.62 40.0 3.89e-01 100.0% 59.3%
5871 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.55 41.0 3.12e-01 100.0% 30.5%
3517323 3131.1.1.2 a+b two layers › FYR domain › FYR domain › FYR domain › FYRN 0.55 40.0 3.21e-01 92.3% 37.3%
3667875 67.1.1.0 beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain 0.55 35.0 3.45e-01 86.5% 60.0%
3424242 226.1.1.2 a+b two layers › POZ domain › POZ domain › POZ domain › Skp1 0.54 45.0 3.23e-01 100.0% 32.4%
4537528 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 39.0 3.62e-01 98.1% 58.6%
4466251 377.12.1.1 few secondary structure elements › Glucocorticoid receptor-like › RPL34 › RPL34 › Ribosomal_L34e 0.53 36.0 2.94e-01 71.2% 47.0%
4888514 323.1.1.5 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.53 37.0 2.40e-01 84.6% 16.5%
3707461 218.1.1.2 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.53 44.0 3.39e-01 100.0% 41.5%
3940272 2498.1.1.14 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.53 41.0 2.59e-01 100.0% 33.1%
3443163 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.52 43.0 3.55e-01 100.0% 76.2%
5049492 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.52 42.0 2.55e-01 100.0% 16.7%
3188358 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 41.0 2.49e-01 88.5% 59.2%
3272379 327.5.1.0 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.51 40.0 3.35e-01 84.6% 80.9%
3926438 304.48.1.37 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_2 0.51 43.0 2.80e-01 98.1% 83.2%
5029758 377.12.1.1 few secondary structure elements › Glucocorticoid receptor-like › RPL34 › RPL34 › Ribosomal_L34e 0.51 35.0 2.88e-01 71.2% 49.5%
3594342 67.1.1.0 beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain 0.51 41.0 3.51e-01 90.4% 65.9%
3785176 4232.1.1.1 few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.50 43.0 3.13e-01 100.0% 87.7%
D2 high residues 79-179
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lysA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.90 85.0 8.42e-01 100.0% 97.1%
2kd1A00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.88 83.0 7.79e-01 100.0% 88.1%
2kobA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.88 77.0 7.99e-01 94.1% 100.0%
2kj5A00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.85 79.0 7.46e-01 98.0% 85.3%
2khqA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.84 77.0 7.70e-01 98.0% 97.1%
1z19A01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.84 76.0 7.68e-01 97.0% 98.0%
2kj9A00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.83 76.0 7.20e-01 98.0% 84.7%
3nrwA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.83 76.0 7.54e-01 99.0% 100.0%
2kj8A00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.82 74.0 7.02e-01 98.0% 86.4%
2kkpA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.80 73.0 6.96e-01 98.0% 87.2%
2keyA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.78 70.0 6.77e-01 97.0% 89.3%
1a0pA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.75 63.0 6.63e-01 94.1% 100.0%
2a3vB01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.74 61.0 6.36e-01 94.1% 95.7%
4a8eA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.73 58.0 6.19e-01 96.0% 100.0%
1xo0A01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.68 61.0 5.96e-01 100.0% 90.1%
2y1eA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.64 31.0 3.36e-01 87.1% 51.7%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.63 55.0 4.96e-01 97.0% 84.2%
2w31A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 53.0 4.69e-01 100.0% 80.9%
2klqA00 1.20.58.870 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 45.0 4.32e-01 79.2% 88.6%
1v07A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 53.0 5.16e-01 100.0% 99.1%
6vxcA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.60 53.0 3.18e-01 100.0% 46.2%
3g3oA00 3.20.100.30 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › VTC, catalytic tunnel domain 0.59 49.0 3.54e-01 89.1% 38.4%
2mabA00 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.59 43.0 4.27e-01 77.2% 98.2%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 43.0 4.36e-01 94.1% 76.7%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.59 38.0 4.41e-01 93.1% 90.5%
1or4B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 50.0 4.43e-01 100.0% 77.2%
1q6aA00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.58 41.0 4.10e-01 74.3% 80.4%
1b0bA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 49.0 4.52e-01 100.0% 91.5%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.57 43.0 4.18e-01 81.2% 92.1%
2qf9A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.55 38.0 3.35e-01 71.3% 87.2%
2oifB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 47.0 4.25e-01 100.0% 88.1%
1yhuB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 47.0 4.30e-01 100.0% 88.2%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 47.0 4.32e-01 100.0% 89.4%
5dikA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.54 38.0 3.68e-01 72.3% 97.3%
1gs0A01 1.20.142.10 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain 0.53 40.0 3.71e-01 79.2% 79.1%
8d7hD01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.53 41.0 3.46e-01 82.2% 69.4%
5ymrC00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.52 44.0 2.69e-01 99.0% 88.2%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.51 35.0 3.68e-01 96.0% 78.0%
3of4A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.51 45.0 3.62e-01 100.0% 66.2%
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.51 43.0 3.02e-01 98.0% 74.7%
7k2tA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 40.0 3.02e-01 100.0% 35.9%
ECOD (80)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4034350 186.1.1.5 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.92 88.0 8.33e-01 100.0% 88.7%
138576 186.1.1.5 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.90 85.0 8.52e-01 100.0% 100.0%
4004726 186.1.1.8 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.89 85.0 8.04e-01 100.0% 89.6%
4233271 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.89 84.0 8.17e-01 100.0% 99.1%
3957640 186.1.1.5 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.89 83.0 8.42e-01 100.0% 100.0%
3964236 186.1.1.8 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.88 83.0 7.81e-01 100.0% 86.7%
3946029 186.1.1.8 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.88 83.0 7.94e-01 100.0% 89.6%
170034 186.1.1.5 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.88 83.0 8.02e-01 100.0% 94.5%
3588691 186.1.1.5 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.88 82.0 8.14e-01 100.0% 99.0%
3165066 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.87 81.0 7.57e-01 98.0% 82.5%
3587366 186.1.1.5 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.87 81.0 8.17e-01 100.0% 99.0%
4334667 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.87 79.0 8.02e-01 96.0% 98.0%
3965042 186.1.1.8 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.87 82.0 7.85e-01 100.0% 88.7%
3587101 186.1.1.5 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.87 82.0 8.09e-01 100.0% 99.0%
4031566 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.87 82.0 7.67e-01 100.0% 87.5%
4458305 186.1.1.5 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.87 82.0 7.78e-01 100.0% 92.2%
4007795 186.1.1.8 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.87 82.0 7.80e-01 100.0% 91.3%
3979101 186.1.1.8 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.87 82.0 7.66e-01 100.0% 87.5%
3948596 186.1.1.8 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.86 81.0 7.74e-01 100.0% 89.6%
4034068 186.1.1.5 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.86 79.0 7.94e-01 98.0% 100.0%
3589750 186.1.1.5 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.85 78.0 7.72e-01 98.0% 93.3%
3979029 186.1.1.8 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.85 79.0 7.95e-01 98.0% 100.0%
4629318 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.85 80.0 7.93e-01 100.0% 100.0%
4008705 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.85 78.0 7.46e-01 98.0% 90.4%
135076 186.1.1.8 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.85 79.0 7.69e-01 98.0% 91.7%
4655797 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.85 73.0 7.52e-01 91.1% 100.0%
4663744 186.1.1.5 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.85 78.0 7.58e-01 99.0% 90.0%
3969537 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.85 76.0 7.67e-01 95.0% 100.0%
4965844 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.84 76.0 7.44e-01 97.0% 93.6%
4169335 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.84 74.0 7.48e-01 93.1% 99.0%
4102411 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.84 74.0 7.24e-01 94.1% 91.8%
4040148 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.84 74.0 7.51e-01 94.1% 100.0%
4362692 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.84 74.0 7.48e-01 94.1% 100.0%
None 0.84 75.0 7.08e-01 96.0% 100.0%
4090274 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.84 74.0 7.34e-01 94.1% 97.1%
5043403 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.84 71.0 7.14e-01 89.1% 92.0%
4377812 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.83 75.0 7.54e-01 95.0% 100.0%
4406227 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.83 75.0 6.93e-01 96.0% 96.0%
4130034 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.83 74.0 7.21e-01 95.0% 91.8%
5082760 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.83 72.0 6.91e-01 92.1% 81.7%
4069480 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.83 75.0 7.28e-01 96.0% 92.7%
5052501 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.83 74.0 7.44e-01 95.0% 100.0%
4667626 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.83 72.0 7.32e-01 93.1% 100.0%
4064194 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.83 74.0 6.98e-01 96.0% 100.0%
4566550 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.83 76.0 7.72e-01 98.0% 100.0%
4097981 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.83 74.0 7.36e-01 96.0% 96.2%
4396981 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.83 74.0 7.51e-01 96.0% 100.0%
4175280 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.83 73.0 7.19e-01 94.1% 100.0%
3504160 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.82 74.0 7.20e-01 96.0% 92.7%
4545574 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.82 74.0 7.51e-01 97.0% 100.0%
4566333 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.82 72.0 7.25e-01 93.1% 99.0%
4959184 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.82 72.0 7.44e-01 96.0% 100.0%
4142699 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.82 74.0 7.50e-01 97.0% 99.0%
3947779 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.82 77.0 7.44e-01 100.0% 92.7%
4140783 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.82 72.0 7.26e-01 94.1% 100.0%
4520087 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.81 72.0 7.31e-01 95.0% 99.0%
4044410 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.81 73.0 6.94e-01 96.0% 93.9%
4965639 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.81 70.0 6.98e-01 93.1% 100.0%
4964250 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.81 72.0 6.93e-01 96.0% 90.4%
4199344 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.81 72.0 6.88e-01 96.0% 94.8%
4142845 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.81 73.0 6.75e-01 97.0% 82.4%
136330 186.1.1.5 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.80 73.0 7.16e-01 98.0% 93.6%
4220256 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.80 72.0 7.04e-01 98.0% 93.6%
4473841 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.80 70.0 6.94e-01 94.1% 95.2%
4949701 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.80 72.0 6.79e-01 98.0% 100.0%
4465167 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.79 70.0 6.83e-01 96.0% 97.3%
4579981 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.79 71.0 6.93e-01 97.0% 92.7%
4041098 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.79 69.0 6.21e-01 96.0% 75.0%
134501 186.1.1.3 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_5 0.78 70.0 6.99e-01 97.0% 97.1%
4063794 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.78 69.0 6.69e-01 95.0% 90.9%
4406523 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.77 70.0 6.84e-01 98.0% 91.8%
3943489 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.76 70.0 7.09e-01 99.0% 100.0%
3517981 186.1.1.11 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_2 0.73 65.0 6.45e-01 97.0% 93.3%
5055663 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.71 62.0 5.72e-01 96.0% 74.6%
4964438 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.70 61.0 5.80e-01 96.0% 82.5%
3945277 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.70 60.0 6.00e-01 97.0% 90.5%
2095887 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.67 60.0 5.76e-01 100.0% 87.3%
3743679 101.1.1.148 alpha arrays › HTH › HTH › Three-helical HTH › EPL1 0.59 47.0 4.67e-01 85.1% 93.3%
3610347 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.51 36.0 3.87e-01 96.0% 88.2%
3977653 601.1.2.88 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › MASE2 0.51 43.0 3.58e-01 92.1% 57.2%
D3 medium residues 188-326
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00589.28 best Phage_integrase 79.7 3.20e-22 99.3% 67.4%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.81 77.0 6.46e-01 100.0% 68.8%
1ae9A00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.81 65.0 6.04e-01 100.0% 68.4%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.77 64.0 5.91e-01 96.4% 69.9%
3uxuA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.72 50.0 4.84e-01 100.0% 62.3%
1a31A03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.63 57.0 5.61e-01 100.0% 91.3%
1xu6A00 4.10.110.20 Few Secondary Structures › Irregular › Spasmolytic Protein; domain 1 › Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain 0.53 27.0 3.37e-01 98.6% 81.2%
ECOD (98)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4137254 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 1.00 98.0 9.37e-01 100.0% 89.7%
4996190 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.89 73.0 7.68e-01 97.8% 93.6%
4936284 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.89 67.0 7.33e-01 100.0% 93.0%
5052541 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.89 70.0 7.44e-01 99.3% 91.2%
5083074 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.89 84.0 8.20e-01 100.0% 91.3%
3289618 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.89 84.0 8.02e-01 98.6% 94.8%
5028332 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.89 69.0 7.32e-01 100.0% 89.6%
4930303 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 66.0 7.27e-01 100.0% 93.0%
4192665 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 72.0 7.79e-01 99.3% 98.3%
3942169 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 71.0 7.51e-01 100.0% 92.8%
4637388 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 65.0 5.98e-01 100.0% 61.8%
5016981 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 66.0 7.17e-01 100.0% 90.0%
3587110 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 81.0 7.85e-01 100.0% 88.7%
3589779 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 84.0 8.18e-01 100.0% 94.0%
5037644 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 67.0 7.19e-01 100.0% 90.8%
5010452 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 65.0 7.30e-01 98.6% 96.4%
4285602 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 71.0 7.38e-01 100.0% 90.0%
4966682 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 66.0 7.23e-01 97.1% 93.9%
4032881 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 73.0 7.40e-01 100.0% 88.9%
5029991 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 67.0 7.10e-01 100.0% 88.8%
5030307 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 68.0 7.19e-01 100.0% 90.4%
4659012 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 82.0 8.08e-01 100.0% 94.5%
5083877 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 70.0 7.18e-01 100.0% 86.7%
3954716 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 77.0 7.70e-01 100.0% 92.1%
4278298 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 73.0 7.41e-01 100.0% 89.6%
4969226 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 70.0 7.09e-01 98.6% 85.9%
3588206 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 79.0 7.67e-01 100.0% 88.7%
3587374 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 82.0 7.68e-01 100.0% 93.9%
3588110 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 79.0 7.91e-01 99.3% 95.0%
4446668 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.86 79.0 7.91e-01 96.4% 95.0%
4522024 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 82.0 7.96e-01 100.0% 94.0%
4134015 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 82.0 7.89e-01 100.0% 95.5%
4120466 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 73.0 7.41e-01 100.0% 90.4%
4964228 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 68.0 6.90e-01 100.0% 84.4%
4004713 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 70.0 7.13e-01 100.0% 87.4%
4960057 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 74.0 7.47e-01 100.0% 90.0%
4981577 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 67.0 7.07e-01 100.0% 90.4%
5052502 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 72.0 7.34e-01 100.0% 90.4%
4247514 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 71.0 7.28e-01 100.0% 89.6%
4153666 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 71.0 7.27e-01 100.0% 89.6%
4959579 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 73.0 7.47e-01 99.3% 92.6%
3969115 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 59.0 6.76e-01 100.0% 94.3%
3590354 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 73.0 7.42e-01 100.0% 91.9%
4004773 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 68.0 7.14e-01 99.3% 92.0%
3984925 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 70.0 7.30e-01 100.0% 92.3%
3979114 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 68.0 7.10e-01 97.8% 90.0%
4338286 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 69.0 7.09e-01 100.0% 88.1%
5059725 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 66.0 5.99e-01 100.0% 62.8%
4112553 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 75.0 7.40e-01 100.0% 89.0%
5003452 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 70.0 7.26e-01 98.6% 92.3%
3969558 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.84 70.0 7.10e-01 100.0% 88.9%
3978568 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 70.0 7.11e-01 100.0% 88.9%
5080069 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 67.0 7.20e-01 97.8% 95.8%
4998701 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 66.0 6.01e-01 97.1% 63.3%
3957659 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 72.0 7.32e-01 100.0% 92.6%
4413773 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 66.0 6.73e-01 100.0% 84.4%
4034079 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 74.0 7.54e-01 100.0% 95.6%
3964552 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 71.0 7.23e-01 100.0% 91.1%
4210863 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 66.0 6.82e-01 100.0% 87.7%
3589594 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 78.0 7.52e-01 100.0% 88.4%
4071300 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 73.0 7.42e-01 99.3% 94.1%
4975762 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 67.0 7.08e-01 100.0% 92.8%
4962932 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 74.0 6.95e-01 100.0% 79.4%
2319285 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 62.0 6.78e-01 100.0% 93.0%
4044870 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 68.0 6.98e-01 100.0% 88.9%
4004483 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 69.0 6.16e-01 100.0% 64.2%
1267972 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 77.0 7.39e-01 98.6% 96.2%
3943153 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 69.0 7.16e-01 100.0% 93.8%
3586881 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 77.0 7.52e-01 99.3% 94.0%
4095013 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 70.0 7.14e-01 100.0% 91.9%
3589872 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 78.0 7.56e-01 100.0% 93.3%
4042318 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 71.0 7.20e-01 100.0% 92.6%
4962166 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 65.0 5.83e-01 97.8% 62.2%
4680466 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.82 58.0 6.27e-01 99.3% 85.0%
3945160 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 68.0 7.08e-01 100.0% 93.1%
5016957 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 68.0 6.24e-01 98.6% 69.7%
4313957 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 71.0 7.20e-01 97.8% 93.3%
5034904 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 64.0 7.02e-01 99.3% 100.0%
4274013 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 77.0 7.47e-01 99.3% 97.3%
3964227 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 71.0 7.34e-01 100.0% 97.7%
4966032 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.80 72.0 7.34e-01 100.0% 97.8%
4580960 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 69.0 6.92e-01 100.0% 88.6%
3945675 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 73.0 7.33e-01 100.0% 95.0%
4261355 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 71.0 7.13e-01 100.0% 92.1%
4965169 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.80 72.0 6.15e-01 100.0% 62.9%
3964171 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 63.0 5.80e-01 100.0% 65.5%
4954764 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 58.0 6.56e-01 100.0% 99.0%
4200953 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 76.0 7.25e-01 100.0% 91.0%
3942448 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 73.0 7.12e-01 97.8% 94.7%
4999472 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 68.0 5.98e-01 96.4% 66.3%
4931987 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 59.0 6.59e-01 97.8% 100.0%
4959043 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 65.0 6.77e-01 97.1% 96.2%
4180367 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 72.0 6.75e-01 100.0% 90.9%
4961786 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 68.0 6.60e-01 100.0% 88.0%
4082783 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.74 70.0 6.63e-01 100.0% 88.1%
5011490 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.71 64.0 6.26e-01 100.0% 88.7%
4938259 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.69 63.0 6.24e-01 97.1% 97.2%
4556095 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.68 63.0 6.24e-01 96.4% 93.8%
D4 medium residues 327-405
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00589.28 best Phage_integrase 63.0 4.30e-17 75.9% 27.3%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.76 53.0 4.02e-01 77.2% 32.9%
4xviA01 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.72 58.0 4.80e-01 89.9% 69.4%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.69 52.0 3.85e-01 79.7% 34.5%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 41.0 4.10e-01 70.9% 67.5%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 38.0 3.94e-01 70.9% 80.3%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.54 37.0 3.97e-01 84.8% 81.4%
3l6aA01 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 37.0 2.93e-01 77.2% 74.2%
1lshA02 1.25.10.20 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Vitellinogen, superhelical 0.51 36.0 2.49e-01 78.5% 46.0%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4608916 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.94 64.0 7.64e-01 70.9% 100.0%
4173465 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.86 58.0 6.87e-01 75.9% 100.0%
4959580 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.85 53.0 6.62e-01 70.9% 100.0%
4194508 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 57.0 6.66e-01 72.2% 100.0%
4007744 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 61.0 4.43e-01 84.8% 29.8%
4281782 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 56.0 5.76e-01 70.9% 73.3%
4959044 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 54.0 6.39e-01 73.4% 98.2%
4981966 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 64.0 4.70e-01 93.7% 33.0%
4034069 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 55.0 6.46e-01 83.5% 100.0%
4071647 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 55.0 6.40e-01 75.9% 100.0%
3281912 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 52.0 6.13e-01 74.7% 94.5%
3943131 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 55.0 6.30e-01 81.0% 93.3%
3290335 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 54.0 5.91e-01 72.2% 84.6%
3514120 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.80 58.0 6.56e-01 82.3% 100.0%
5080070 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 54.0 6.38e-01 73.4% 100.0%
3985600 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 64.0 6.78e-01 92.4% 98.6%
4961949 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.78 53.0 6.15e-01 72.2% 100.0%
4966033 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.78 55.0 6.31e-01 77.2% 100.0%
2417767 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 56.0 6.46e-01 78.5% 100.0%
3945143 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 52.0 6.15e-01 79.7% 100.0%
3957642 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 52.0 6.04e-01 70.9% 100.0%
4004483 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 59.0 4.33e-01 91.1% 33.7%
4181053 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 60.0 4.40e-01 94.9% 33.5%
3385608 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 54.0 6.19e-01 79.7% 100.0%
4441096 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.74 54.0 6.10e-01 78.5% 100.0%
3589854 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.74 56.0 6.14e-01 82.3% 96.9%
4000123 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.73 55.0 5.42e-01 81.0% 84.7%
4981564 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 48.0 5.67e-01 70.9% 100.0%
3798378 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 53.0 5.46e-01 79.7% 90.7%
3589967 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.71 51.0 5.56e-01 79.7% 92.3%
4400327 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.71 57.0 5.44e-01 84.8% 95.6%
1267973 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.68 52.0 5.48e-01 81.0% 95.8%
1695424 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.67 50.0 5.33e-01 82.3% 88.6%