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KY092480.1__APD18582.1__SEA_PICARD_53__00053

Bact-Vir

KY092480.1__APD18582.1__SEA_PICARD_53__00053

Identity

Accession:
KY092480 ↗
Kingdom:
phage

Quality

76.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 192-250
PDB
D2 high residues 442-512
PDB
CATH (62)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.83 59.0 5.97e-01 95.8% 75.4%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 59.0 6.19e-01 100.0% 82.8%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 55.0 6.35e-01 90.1% 98.0%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 55.0 6.24e-01 85.9% 100.0%
4kbmB01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.76 56.0 6.25e-01 91.5% 100.0%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 55.0 6.10e-01 91.5% 96.5%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 56.0 5.91e-01 94.4% 88.9%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 65.0 6.56e-01 100.0% 95.8%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 56.0 5.91e-01 95.8% 93.5%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 53.0 5.69e-01 93.0% 91.5%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 53.0 5.49e-01 88.7% 83.1%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.72 55.0 5.94e-01 94.4% 98.3%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 63.0 5.98e-01 97.2% 81.0%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.72 65.0 4.98e-01 100.0% 46.4%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 55.0 5.39e-01 90.1% 77.6%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.70 59.0 6.05e-01 97.2% 97.0%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.70 59.0 5.07e-01 91.5% 88.1%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 55.0 4.68e-01 85.9% 72.2%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.69 57.0 4.85e-01 93.0% 56.9%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 56.0 4.60e-01 95.8% 49.6%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.68 61.0 4.32e-01 100.0% 36.2%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.68 61.0 4.93e-01 98.6% 59.8%
3h7oB01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.67 52.0 4.50e-01 84.5% 91.2%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 52.0 4.61e-01 85.9% 78.2%
2rhiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 58.0 4.99e-01 100.0% 64.3%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 58.0 5.65e-01 98.6% 93.5%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 48.0 5.22e-01 85.9% 94.9%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.65 57.0 5.15e-01 97.2% 73.2%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.64 58.0 4.26e-01 100.0% 46.5%
3ceyB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 55.0 4.41e-01 95.8% 70.2%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 49.0 5.10e-01 87.3% 90.6%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.63 56.0 4.02e-01 100.0% 40.2%
3cp7B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 51.0 4.52e-01 90.1% 93.3%
2ew0A00 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.62 52.0 3.91e-01 93.0% 81.7%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 53.0 4.20e-01 95.8% 93.2%
1xhnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 47.0 3.70e-01 87.3% 84.9%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 46.0 3.43e-01 87.3% 79.9%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 40.0 4.17e-01 78.9% 76.9%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.59 48.0 3.72e-01 93.0% 74.1%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.58 48.0 4.24e-01 93.0% 97.2%
3n91A02 2.40.128.420 Mainly Beta › Beta Barrel › Lipocalin › 0.57 45.0 3.80e-01 93.0% 97.1%
4kc5C03 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.56 40.0 2.69e-01 76.1% 84.9%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 43.0 3.59e-01 88.7% 96.5%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.55 46.0 3.33e-01 94.4% 88.2%
2xstA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 46.0 3.70e-01 95.8% 73.8%
3l4rA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 44.0 3.60e-01 95.8% 74.2%
3kh8A02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 38.0 3.13e-01 74.6% 89.5%
1mvpA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.54 40.0 3.51e-01 81.7% 94.6%
3s6pA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.54 45.0 3.69e-01 97.2% 89.4%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 47.0 3.97e-01 98.6% 85.7%
3rd7A00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.53 40.0 2.68e-01 80.3% 61.1%
2eenA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.53 38.0 2.92e-01 77.5% 67.2%
4mveA00 2.40.128.580 Mainly Beta › Beta Barrel › Lipocalin › GXWXG domain 0.53 41.0 3.39e-01 90.1% 79.6%
3h6qA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 42.0 3.31e-01 93.0% 99.4%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 3.40e-01 95.8% 100.0%
4mp8A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.51 36.0 2.84e-01 74.6% 78.9%
3lq6A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.51 44.0 3.82e-01 98.6% 98.2%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 41.0 3.29e-01 90.1% 94.0%
3wjcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 41.0 3.30e-01 91.5% 93.5%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 38.0 3.43e-01 87.3% 88.3%
4qfwA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.50 39.0 2.76e-01 87.3% 44.9%
2gs5A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.50 41.0 3.17e-01 97.2% 79.8%
ECOD (99)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3275615 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.86 73.0 5.84e-01 98.6% 49.6%
3553983 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.82 63.0 6.81e-01 97.2% 96.7%
3712782 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 60.0 5.81e-01 98.6% 70.0%
3660922 4.1.1.249 beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.80 58.0 6.04e-01 95.8% 83.1%
3581896 4.1.1.249 beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.78 57.0 5.99e-01 95.8% 84.6%
3619619 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 61.0 6.18e-01 97.2% 85.7%
3929373 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.77 61.0 6.61e-01 98.6% 100.0%
3268160 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 70.0 6.40e-01 100.0% 87.8%
3514556 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 61.0 6.17e-01 100.0% 88.6%
3587906 4.1.1.46 beta barrels › SH3 › SH3 › SH3 › VEG 0.75 68.0 6.57e-01 98.6% 95.0%
3841414 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.75 64.0 6.43e-01 100.0% 92.9%
3922426 4.1.1.363 beta barrels › SH3 › SH3 › SH3 › Agenet, Tudor_FRX1 0.75 63.0 5.26e-01 100.0% 54.2%
4251101 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 67.0 6.34e-01 100.0% 88.2%
4484974 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 66.0 6.20e-01 98.6% 87.1%
3651964 4.1.1.249 beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.74 58.0 4.84e-01 98.6% 50.0%
4559371 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 58.0 6.08e-01 94.4% 95.2%
3366578 4.1.1.325 beta barrels › SH3 › SH3 › SH3 › KOW, KOW2_Spt5 0.73 58.0 4.80e-01 98.6% 50.0%
3743730 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 63.0 6.17e-01 100.0% 88.0%
3730229 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.73 58.0 5.74e-01 98.6% 81.3%
3223929 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 63.0 4.86e-01 95.8% 72.9%
4596087 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 65.0 6.43e-01 98.6% 98.7%
3459099 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.72 64.0 5.56e-01 95.8% 73.3%
3941004 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 64.0 6.12e-01 95.8% 90.0%
4272564 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.72 66.0 5.62e-01 98.6% 65.7%
5035935 219.1.1.26 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Phytochelatin 0.72 64.0 4.72e-01 100.0% 47.6%
3220929 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 59.0 5.86e-01 97.2% 85.3%
2755606 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.72 65.0 4.46e-01 98.6% 30.9%
3575581 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.72 65.0 4.87e-01 98.6% 42.4%
3709279 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 64.0 5.86e-01 95.8% 76.7%
3241890 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 60.0 5.35e-01 95.8% 66.0%
4024274 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.72 65.0 5.66e-01 98.6% 67.6%
3926179 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 60.0 6.23e-01 95.8% 100.0%
3477401 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.71 65.0 4.38e-01 98.6% 28.6%
3591670 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 53.0 5.99e-01 85.9% 100.0%
4031177 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.71 57.0 4.01e-01 85.9% 40.2%
5022491 4.1.1.182 beta barrels › SH3 › SH3 › SH3 › DUF2097 0.71 65.0 6.10e-01 100.0% 85.9%
1503651 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.71 56.0 5.43e-01 100.0% 76.2%
3932484 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 59.0 6.20e-01 97.2% 100.0%
2526961 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.71 56.0 3.92e-01 85.9% 39.4%
3738626 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.71 64.0 4.97e-01 98.6% 55.2%
None 0.71 56.0 3.94e-01 85.9% 40.1%
None 0.70 56.0 3.96e-01 85.9% 39.0%
3595833 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 62.0 5.62e-01 95.8% 71.6%
3188712 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.70 63.0 5.59e-01 100.0% 89.0%
3924619 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 63.0 5.28e-01 100.0% 60.0%
3930366 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 54.0 5.78e-01 93.0% 98.3%
None 0.70 55.0 3.89e-01 85.9% 38.6%
None 0.69 55.0 3.92e-01 85.9% 41.0%
4387060 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.69 55.0 3.89e-01 85.9% 40.0%
3959465 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.69 59.0 4.80e-01 93.0% 67.7%
3494307 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.69 60.0 4.98e-01 95.8% 78.4%
3244773 1.1.5.49 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 0.69 55.0 3.73e-01 87.3% 91.9%
5039728 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.69 57.0 3.94e-01 91.5% 47.1%
4247805 1.1.5.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.68 56.0 4.01e-01 90.1% 44.5%
3937299 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 53.0 4.88e-01 90.1% 65.6%
185736 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.68 61.0 4.24e-01 100.0% 33.5%
4283343 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 61.0 5.90e-01 100.0% 96.2%
3807651 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.68 60.0 5.17e-01 97.2% 72.7%
4572937 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.68 59.0 4.42e-01 95.8% 61.2%
5040907 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.68 57.0 3.96e-01 91.5% 45.2%
3409460 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 61.0 5.35e-01 100.0% 72.4%
3300226 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.68 60.0 5.80e-01 97.2% 97.5%
3923813 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 56.0 5.83e-01 97.2% 98.5%
3281945 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 59.0 5.46e-01 98.6% 80.0%
5027789 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.67 57.0 5.07e-01 93.0% 79.0%
3816455 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.67 60.0 4.97e-01 100.0% 68.0%
3927795 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 52.0 5.56e-01 91.5% 98.3%
3940362 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 54.0 3.77e-01 95.8% 27.5%
4545520 4.7.1.7 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › WYL 0.67 58.0 5.46e-01 98.6% 81.2%
3890336 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.66 56.0 3.80e-01 95.8% 37.8%
3928050 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 60.0 4.81e-01 100.0% 52.6%
3953109 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.66 58.0 5.27e-01 98.6% 73.7%
5063188 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.66 54.0 3.84e-01 90.1% 85.6%
5035884 2004.6.1.1 a/b three-layered sandwiches › P-loop domains-like › C-terminal domain in a putative metallopeptidase YP_676511.1 › C-terminal domain in a putative metallopeptidase YP_676511.1 › MlrC_C 0.66 52.0 3.85e-01 87.3% 34.3%
3415399 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.66 54.0 3.82e-01 90.1% 45.1%
4024240 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 57.0 5.46e-01 98.6% 85.0%
3507003 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 55.0 5.45e-01 95.8% 96.0%
3989070 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.65 53.0 3.77e-01 90.1% 42.7%
4625654 4.1.1.445 beta barrels › SH3 › SH3 › SH3 › Spore_GerQ 0.64 54.0 5.36e-01 95.8% 88.0%
3233461 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 50.0 5.39e-01 88.7% 100.0%
4457262 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.64 48.0 4.13e-01 80.3% 80.0%
3182025 4.1.1.475 beta barrels › SH3 › SH3 › SH3 › PF26640 0.64 51.0 4.18e-01 88.7% 64.4%
3283097 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.62 54.0 4.73e-01 98.6% 63.6%
5051302 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.62 51.0 3.65e-01 91.5% 44.0%
3719783 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 54.0 4.89e-01 97.2% 83.0%
5080210 71.1.1.8 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.61 47.0 3.36e-01 84.5% 69.1%
3634475 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.93e-01 87.3% 95.7%
3693741 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.83e-01 87.3% 95.7%
3974873 219.1.1.35 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › SpvD 0.58 51.0 3.67e-01 100.0% 44.3%
3632407 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 50.0 4.22e-01 95.8% 81.2%
3220497 1.1.17.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.55 42.0 3.05e-01 85.9% 38.2%
3315951 220.1.1.86 beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.55 43.0 4.25e-01 88.7% 97.5%
3201755 219.1.1.93 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.54 45.0 3.49e-01 95.8% 42.4%
3415428 1.1.7.69 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.54 47.0 4.20e-01 100.0% 88.6%
3624046 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 43.0 3.63e-01 88.7% 81.7%
3399367 9.2.1.5 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF7043 0.53 45.0 4.11e-01 93.0% 93.7%
3474038 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.53 44.0 3.64e-01 97.2% 97.9%
3436557 220.4.1.8 beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins › ZGRF1-like_N 0.52 40.0 4.00e-01 85.9% 100.0%
3207857 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 43.0 2.72e-01 94.4% 20.5%
D3 high residues 532-640
PDB
D4 medium residues 3-80
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mz0B05 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.67 46.0 4.89e-01 100.0% 85.1%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.66 45.0 4.92e-01 100.0% 88.7%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 47.0 4.82e-01 91.0% 83.6%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.62 42.0 4.40e-01 70.5% 88.7%
3cegA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.59 51.0 3.54e-01 100.0% 52.1%
5mdtA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 43.0 3.45e-01 79.5% 84.9%
2guzA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.57 38.0 3.94e-01 100.0% 74.6%
6tznA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 50.0 4.54e-01 100.0% 87.0%
2ba0A03 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.57 42.0 4.19e-01 80.8% 78.3%
1hr6A01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.57 48.0 3.65e-01 100.0% 74.8%
2fu2A00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.56 48.0 4.81e-01 100.0% 97.4%
1gzsB00 1.10.4120.10 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › SopE-like, GEF domain 0.56 41.0 3.24e-01 78.2% 74.5%
3msyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 40.0 3.53e-01 74.4% 91.0%
2ygwA01 1.20.140.90 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain 0.56 46.0 3.69e-01 91.0% 85.6%
6ofsA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.55 46.0 3.50e-01 100.0% 75.8%
3edeA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 40.0 2.53e-01 76.9% 85.7%
1xocA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.54 42.0 3.68e-01 84.6% 67.5%
2radA03 1.20.1440.30 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Biosynthetic Protein domain 0.54 46.0 4.02e-01 98.7% 72.4%
4j0eA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 39.0 2.95e-01 76.9% 32.2%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.53 39.0 3.89e-01 83.3% 75.9%
2gf2A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.53 43.0 3.67e-01 91.0% 76.1%
2fe1A00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.53 38.0 3.27e-01 100.0% 46.2%
2nrlA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 45.0 3.78e-01 100.0% 85.5%
1np7A02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 37.0 3.32e-01 78.2% 65.5%
3bjdA01 1.10.1240.20 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain 0.51 44.0 4.25e-01 98.7% 85.2%
2cvzA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.51 42.0 3.57e-01 92.3% 73.5%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 44.0 4.25e-01 98.7% 88.8%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5074509 241.11.1.7 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › DUF3788 0.67 48.0 4.05e-01 96.2% 44.4%
5029911 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.66 42.0 4.70e-01 96.2% 84.7%
4089556 7575.1.1.6 a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C80 0.64 49.0 3.28e-01 82.1% 88.1%
4980819 622.1.1.0 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain 0.64 47.0 5.13e-01 82.1% 95.4%
3632147 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.61 52.0 4.86e-01 100.0% 76.0%
3662138 109.4.1.222 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DCB 0.61 49.0 3.48e-01 85.9% 45.8%
4956162 4995.1.1.0 alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like 0.60 43.0 4.44e-01 76.9% 96.0%
3878887 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.58 48.0 3.26e-01 91.0% 48.7%
4464578 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.58 39.0 4.12e-01 94.9% 78.6%
4137468 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.58 43.0 3.35e-01 96.2% 34.1%
3546766 304.9.1.115 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RBD_ZCCHC3_1st 0.58 49.0 4.87e-01 100.0% 97.6%
3986322 4270.1.1.0 alpha bundles › N-terminal domain of Hypothetical protein MPN330 › N-terminal domain of Hypothetical protein MPN330 › N-terminal domain of Hypothetical protein MPN330 0.58 46.0 4.62e-01 100.0% 87.5%
4562076 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.57 43.0 3.96e-01 82.1% 63.8%
5055142 2006.1.2.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › DHH 0.57 43.0 3.29e-01 83.3% 78.5%
3961786 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.57 41.0 3.24e-01 94.9% 33.5%
5045529 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.57 41.0 4.39e-01 92.3% 92.3%
4026290 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.57 46.0 4.32e-01 100.0% 73.0%
3824583 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.56 41.0 3.18e-01 94.9% 32.6%
3505626 186.2.1.1 alpha arrays › lambda integrase-N-like › VEFS domain › VEFS domain › VEFS-Box 0.56 42.0 4.01e-01 82.1% 88.4%
4932668 327.11.2.3 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.55 41.0 4.09e-01 80.8% 82.5%
4968957 2006.1.2.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › DHH 0.55 41.0 3.19e-01 83.3% 79.0%
3615307 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.55 42.0 3.97e-01 93.6% 68.4%
4022084 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.54 46.0 3.36e-01 100.0% 46.0%
3189064 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.54 45.0 3.78e-01 96.2% 80.0%
3218736 109.4.1.17 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin 0.54 39.0 2.55e-01 76.9% 22.1%
4995245 2006.1.2.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › DHH 0.54 41.0 3.10e-01 83.3% 75.6%
4335143 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.54 40.0 3.82e-01 80.8% 69.5%
4022615 109.4.1.507 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF3632 0.54 48.0 3.26e-01 100.0% 40.0%
3904125 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.53 41.0 2.80e-01 87.2% 84.5%
3214818 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.53 46.0 3.01e-01 100.0% 99.5%
3669585 109.4.1.1475 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27629 0.51 43.0 2.65e-01 93.6% 23.7%
4277373 4994.1.1.1 alpha duplicates or obligate multimers › EF2458-like › EF2458-like › EF2458-like › DUF1507 0.51 40.0 3.76e-01 89.7% 69.9%
5026276 2002.1.1.4 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Alpha-amylase 0.51 42.0 2.82e-01 94.9% 33.3%
4997126 304.128.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.51 43.0 3.94e-01 100.0% 83.6%