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KY176369.1__APM00283.1__STP03_027__00027

Bact-Vir

KY176369.1__APM00283.1__STP03_027__00027

Identity

Accession:
KY176369 ↗
Kingdom:
phage

Quality

89.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sarkviridae› Jerseyvirus› Salmonella_phage_STP03

TaxID: 1914788

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-63
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.75 55.0 4.55e-01 78.7% 57.5%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 51.0 3.93e-01 83.6% 88.9%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 50.0 5.08e-01 83.6% 91.8%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 49.0 3.70e-01 85.2% 76.2%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 52.0 5.38e-01 100.0% 98.2%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 48.0 5.02e-01 98.4% 98.1%
2arzA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 47.0 3.58e-01 83.6% 77.3%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 54.0 5.43e-01 100.0% 100.0%
2cztA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 51.0 3.96e-01 100.0% 71.0%
4a7kA03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 50.0 3.82e-01 96.7% 91.8%
5yprA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 51.0 4.70e-01 100.0% 98.8%
2x8fA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 47.0 3.04e-01 90.2% 52.0%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 43.0 3.89e-01 98.4% 54.4%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.59 46.0 4.65e-01 98.4% 88.3%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.59 51.0 4.40e-01 98.4% 64.9%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.59 43.0 4.01e-01 80.3% 100.0%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 43.0 4.45e-01 98.4% 87.5%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.59 48.0 4.52e-01 98.4% 87.5%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 50.0 4.29e-01 100.0% 79.6%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.58 41.0 3.94e-01 75.4% 81.7%
2k0mA00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 45.0 3.88e-01 88.5% 60.6%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 48.0 3.93e-01 100.0% 86.3%
1iucA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.57 44.0 2.88e-01 86.9% 92.3%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 49.0 3.93e-01 100.0% 75.6%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 4.41e-01 90.2% 85.5%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.57 39.0 4.18e-01 100.0% 95.8%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 4.21e-01 91.8% 76.1%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 4.05e-01 90.2% 93.8%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 42.0 4.09e-01 91.8% 75.0%
3f6zB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.54 44.0 4.14e-01 95.1% 97.5%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.54 39.0 3.29e-01 82.0% 80.5%
1nunA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 45.0 3.53e-01 96.7% 61.9%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 44.0 4.29e-01 100.0% 85.7%
1aq3A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.53 41.0 3.28e-01 86.9% 65.1%
1mtpA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 39.0 3.50e-01 82.0% 86.8%
7tzoA01 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.53 38.0 2.83e-01 78.7% 39.7%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 42.0 3.67e-01 95.1% 63.5%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 3.83e-01 85.2% 89.2%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.51 36.0 3.76e-01 96.7% 88.9%
1hp7A01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.50 39.0 3.44e-01 86.9% 93.7%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.50 42.0 2.79e-01 98.4% 83.6%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4117297 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 61.0 5.89e-01 98.4% 80.0%
3227822 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.67 48.0 3.30e-01 77.0% 21.4%
4367301 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 53.0 5.53e-01 100.0% 96.4%
3213122 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.67 55.0 4.57e-01 100.0% 52.4%
4669027 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.67 58.0 3.90e-01 100.0% 72.5%
4028987 219.1.1.36 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C92 0.67 59.0 4.22e-01 100.0% 41.1%
5016556 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 57.0 5.05e-01 100.0% 76.7%
4616207 4.1.1.448 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5372 0.64 45.0 4.80e-01 73.8% 96.0%
2713758 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.64 50.0 3.74e-01 85.2% 75.0%
2464247 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.64 48.0 4.77e-01 83.6% 84.8%
3924377 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 50.0 5.18e-01 98.4% 96.4%
3573585 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.64 47.0 4.95e-01 80.3% 96.3%
1138340 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.63 48.0 3.63e-01 85.2% 73.9%
3278425 1.1.5.15 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › F420H2_quin_red 0.63 45.0 3.55e-01 78.7% 85.4%
3963450 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.63 49.0 3.88e-01 100.0% 40.0%
3553983 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.62 49.0 4.95e-01 98.4% 90.0%
4937587 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.61 53.0 3.95e-01 100.0% 76.4%
4041376 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 50.0 4.65e-01 98.4% 72.5%
3520328 5.1.5.152 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › BBS2_N, BBS2_Mid 0.61 47.0 3.08e-01 85.2% 26.3%
5037361 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.60 53.0 3.89e-01 100.0% 46.7%
3578208 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 45.0 4.73e-01 98.4% 94.5%
4605602 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.62e-01 91.8% 83.1%
3285969 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.59 44.0 3.50e-01 83.6% 80.7%
3342854 1.1.5.34 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyrid_oxidase_2 0.59 45.0 3.33e-01 85.2% 66.5%
3973145 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.59 46.0 4.80e-01 90.2% 94.5%
3684553 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.59 44.0 3.21e-01 85.2% 59.1%
3548416 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.58 48.0 4.01e-01 100.0% 87.5%
3924038 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 51.0 4.78e-01 100.0% 88.0%
4027502 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 46.0 4.54e-01 88.5% 95.4%
3396897 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 50.0 4.97e-01 98.4% 96.8%
3575066 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 50.0 5.05e-01 98.4% 100.0%
3971321 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.57 46.0 4.47e-01 98.4% 81.2%
3989574 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 43.0 4.00e-01 98.4% 62.4%
5053202 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.57 36.0 4.00e-01 91.8% 100.0%
4349950 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.56 40.0 4.10e-01 85.2% 78.3%
3402045 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.56 47.0 4.08e-01 100.0% 81.0%
3275615 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.56 45.0 3.57e-01 95.1% 42.6%
3804087 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.56 42.0 3.34e-01 85.2% 94.3%
4927654 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 44.0 4.36e-01 95.1% 95.4%
3240406 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.55 47.0 3.89e-01 100.0% 88.7%
4296071 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 44.0 3.43e-01 100.0% 75.9%
3470815 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 47.0 4.56e-01 100.0% 91.4%
4890599 1.1.7.80 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RND-MFP_C 0.54 35.0 3.51e-01 78.7% 62.1%
3485745 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 45.0 4.56e-01 96.7% 96.7%
5022848 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 42.0 4.28e-01 88.5% 88.3%
4466506 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 46.0 4.37e-01 100.0% 82.7%
4022912 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.54 43.0 2.74e-01 95.1% 24.4%
3398496 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.54 39.0 4.09e-01 96.7% 90.9%
5026377 375.1.1.9 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.51 39.0 3.68e-01 86.9% 98.8%
4263827 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 41.0 3.35e-01 100.0% 87.6%
3969097 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.51 30.0 3.28e-01 93.4% 70.0%