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KY203335.1__APQ42443.1__X__00003

Bact-Vir

KY203335.1__APQ42443.1__X__00003

Identity

Accession:
KY203335 ↗
Kingdom:
phage

Quality

94.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pasteurella_phage_PMP-GADVASU-IND

TaxID: 1927015

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 110-169
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 54.0 5.21e-01 70.0% 67.2%
1k78A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 59.0 5.76e-01 83.3% 83.3%
4wcgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 52.0 5.25e-01 71.7% 75.4%
2h09A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 51.0 4.83e-01 70.0% 69.0%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.75 50.0 5.56e-01 70.0% 100.0%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 51.0 5.03e-01 71.7% 69.8%
4bjtA02 1.10.10.2170 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.73 51.0 5.53e-01 76.7% 88.0%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 49.0 4.64e-01 75.0% 66.2%
4fx0A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 46.0 3.66e-01 76.7% 48.4%
1a9xA04 1.10.1030.10 Mainly Alpha › Orthogonal Bundle › Carbamoyl Phosphate Synthetase; Chain A, domain 4 › Carbamoyl-phosphate synthetase, large subunit oligomerisation domain 0.59 49.0 3.62e-01 90.0% 77.3%
1ftkA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.57 40.0 3.47e-01 100.0% 45.2%
4edgA01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.55 37.0 2.98e-01 70.0% 97.8%
4wxjA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 39.0 3.34e-01 100.0% 43.5%
2pjqA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.54 37.0 3.42e-01 75.0% 100.0%
5x8tT00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.54 37.0 2.88e-01 70.0% 67.4%
3kbbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 37.0 3.56e-01 73.3% 75.7%
1jcjA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 40.0 2.71e-01 86.7% 96.0%
5veoA01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.51 34.0 2.30e-01 70.0% 75.7%
2wwwC01 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.51 36.0 3.83e-01 75.0% 94.2%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004840 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.89 69.0 6.18e-01 81.7% 66.3%
3870644 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.81 63.0 6.83e-01 81.7% 100.0%
4014100 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.79 60.0 6.09e-01 81.7% 88.3%
3890615 101.1.1.17 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.78 53.0 5.73e-01 70.0% 86.0%
3477766 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 48.0 4.29e-01 76.7% 81.2%
3589727 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 45.0 3.94e-01 73.3% 93.5%
3240760 101.1.17.2 ↗ alpha arrays › HTH › HTH › FF domain › FF 0.65 46.0 4.61e-01 75.0% 93.3%
3225117 101.1.17.2 ↗ alpha arrays › HTH › HTH › FF domain › FF 0.60 42.0 4.19e-01 75.0% 86.2%
3925574 3105.1.1.4 ↗ a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › MOLO1 0.60 41.0 2.95e-01 73.3% 79.2%
3316316 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.57 40.0 3.55e-01 75.0% 65.6%
3685647 109.4.1.46 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N 0.57 43.0 2.62e-01 85.0% 13.8%
4029953 1008.1.1.0 ↗ alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain 0.56 33.0 2.96e-01 96.7% 41.2%
3491709 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.54 43.0 3.42e-01 98.3% 40.0%
4857817 101.1.2.13 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin 0.54 40.0 4.14e-01 83.3% 92.7%
4665306 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.52 36.0 2.48e-01 76.7% 30.2%
4943686 2485.4.1.1 ↗ a+b three layers › Thioredoxin-like › Fumarate hydratase N-terminal domain › Fumarate hydratase N-terminal domain › Fumerase 0.50 35.0 2.67e-01 75.0% 89.4%
D2 medium residues 6-108
PDB
Domain cluster: representative