←Back to structures
AQQ75447.1
Arc-VirKY229234__AQQ75447.1__JdFRA1000001-14c__00014
Identity
- Accession:
- KY229234 ↗
- Protein ID:
- AQQ75447.1 ↗
- Kingdom:
- archaea
Quality
95.4
mean pLDDT
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-62
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5l8sA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.67 | 48.0 | 3.15e-01 | 75.8% | 52.1% |
| 3m8eA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 39.0 | 3.31e-01 | 91.9% | 41.6% |
| 1gqyB02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.58 | 46.0 | 3.29e-01 | 91.9% | 83.9% |
| 4zocA02 | 3.40.50.1700 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycoside hydrolase family 3 C-terminal domain | 0.57 | 45.0 | 3.10e-01 | 90.3% | 59.5% |
| 1nmnA00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.56 | 45.0 | 3.73e-01 | 91.9% | 92.5% |
| 4fb2A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.56 | 49.0 | 3.03e-01 | 100.0% | 27.3% |
| 1r44A00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.55 | 44.0 | 3.12e-01 | 88.7% | 84.2% |
| 1sd4A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 38.0 | 3.85e-01 | 91.9% | 71.9% |
| 4j1qA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 42.0 | 2.58e-01 | 83.9% | 28.3% |
| 2qbuA01 | 3.40.1010.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain | 0.54 | 45.0 | 3.68e-01 | 100.0% | 87.1% |
| 6kxdA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.54 | 47.0 | 3.63e-01 | 100.0% | 59.9% |
| 1nrjA00 | 3.30.450.60 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.53 | 43.0 | 3.32e-01 | 90.3% | 76.9% |
| 5uivA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 43.0 | 3.07e-01 | 98.4% | 95.1% |
| 1nd7A01 | 3.90.1750.10 | Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Hect, E3 ligase catalytic domains | 0.53 | 43.0 | 3.10e-01 | 90.3% | 82.9% |
| 4ix1A00 | 3.40.50.12500 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 41.0 | 2.94e-01 | 95.2% | 88.5% |
| 1t6aA02 | 3.30.310.120 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein | 0.52 | 40.0 | 3.74e-01 | 83.9% | 66.7% |
| 4ifeA02 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.52 | 42.0 | 2.83e-01 | 87.1% | 70.5% |
| 1a3wA01 | 3.40.1380.20 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain | 0.52 | 46.0 | 3.44e-01 | 100.0% | 59.4% |
| 1qoyA00 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.52 | 44.0 | 2.88e-01 | 100.0% | 58.7% |
| 2i6tA02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.52 | 45.0 | 3.44e-01 | 100.0% | 76.3% |
| 1fs0G01 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.52 | 41.0 | 3.43e-01 | 96.8% | 87.7% |
| 2km1A00 | 3.40.50.11000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Fe-S cluster assembly protein Dre2, N-terminal domain | 0.50 | 37.0 | 3.07e-01 | 90.3% | 42.7% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3788556 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.58 | 49.0 | 4.09e-01 | 98.4% | 75.7% |
| 3256406 | 307.1.1.2 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15 | 0.57 | 45.0 | 3.17e-01 | 87.1% | 72.9% |
| 3382543 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 43.0 | 3.80e-01 | 91.9% | 58.9% |
| 3531821 | 140.1.1.14 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e | 0.54 | 44.0 | 2.92e-01 | 87.1% | 42.0% |
| 1295874 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.54 | 42.0 | 3.22e-01 | 88.7% | 74.1% |
| 3548337 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 39.0 | 3.27e-01 | 100.0% | 45.7% |
| 3298593 | 109.4.1.43 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SAC3_GANP | 0.53 | 44.0 | 2.90e-01 | 91.9% | 61.5% |
| 3935353 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 38.0 | 3.42e-01 | 91.9% | 56.6% |
| 3329386 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 40.0 | 3.60e-01 | 93.5% | 60.0% |
| 3958385 | 101.1.2.670 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF4194 | 0.52 | 40.0 | 3.44e-01 | 91.9% | 52.0% |
| 4407103 | 327.16.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system | 0.51 | 37.0 | 3.81e-01 | 77.4% | 96.7% |
| 3937789 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.51 | 36.0 | 2.78e-01 | 77.4% | 62.4% |
| 4015046 | 129.1.1.0 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like | 0.50 | 44.0 | 3.20e-01 | 98.4% | 97.1% |
| 3480625 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.50 | 44.0 | 3.19e-01 | 100.0% | 91.4% |
| 3805510 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.50 | 40.0 | 3.01e-01 | 93.5% | 34.8% |
D2
medium
residues 63-123
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kobA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.68 | 57.0 | 4.98e-01 | 93.4% | 80.6% |
| 3lysA00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.65 | 55.0 | 4.59e-01 | 93.4% | 89.5% |
| 1urjA03 | 1.10.150.560 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.65 | 46.0 | 4.23e-01 | 75.4% | 64.6% |
| 2khqA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.64 | 53.0 | 4.56e-01 | 95.1% | 75.5% |
| 6n8eA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.61 | 48.0 | 3.47e-01 | 86.9% | 76.2% |
| 2w9mB01 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.58 | 47.0 | 4.25e-01 | 91.8% | 88.4% |
| 2wl8C00 | 1.20.120.900 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pex19, mPTS binding domain | 0.57 | 41.0 | 3.45e-01 | 77.0% | 77.1% |
| 2yqyA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.53 | 43.0 | 3.45e-01 | 93.4% | 93.7% |
| 2o0yB02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.51 | 42.0 | 3.13e-01 | 98.4% | 74.6% |
| 3w6zA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.50 | 36.0 | 3.05e-01 | 82.0% | 71.9% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3198255 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.68 | 57.0 | 5.23e-01 | 93.4% | 86.3% |
| 3870183 | 4218.1.1.0 ↗ | alpha bundles › TAFH domain-like › TAFH domain-like › TAFH domain-like | 0.67 | 59.0 | 4.55e-01 | 98.4% | 43.5% |
| 3889409 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.67 | 53.0 | 3.71e-01 | 90.2% | 50.7% |
| 3525197 | 130.1.2.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 › LETM1_RBD | 0.64 | 54.0 | 3.91e-01 | 96.7% | 85.4% |
| 3723553 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.63 | 52.0 | 4.82e-01 | 93.4% | 92.5% |
| 3477704 | 11.1.1.159 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Xylo_C | 0.61 | 44.0 | 2.87e-01 | 77.0% | 97.6% |
| 1487360 | 3929.1.1.1 ↗ | alpha bundles › THO1 C-terminal domain › THO1 C-terminal domain › THO1 C-terminal domain › Tho1_MOS11_C | 0.61 | 49.0 | 4.76e-01 | 90.2% | 80.6% |
| 3175298 | 130.1.1.51 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Tho1_MOS11_C | 0.61 | 49.0 | 4.96e-01 | 90.2% | 96.7% |
| 4237257 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.58 | 47.0 | 4.22e-01 | 93.4% | 78.9% |
| 4987994 | 633.2.1.0 ↗ | alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein | 0.58 | 47.0 | 4.57e-01 | 95.1% | 98.6% |
| 3513438 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 49.0 | 4.23e-01 | 96.7% | 68.4% |
| 3253102 | 109.4.1.142 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CSN8_PSD8_EIF3K | 0.51 | 40.0 | 2.89e-01 | 86.9% | 28.1% |
| 3783241 | 223.2.1.3 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s | 0.51 | 40.0 | 3.22e-01 | 93.4% | 55.2% |
| 4331897 | 235.1.1.41 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › TraH_2 | 0.51 | 39.0 | 2.98e-01 | 83.6% | 43.3% |