←Back to structures
AQQ75475.1
Arc-VirKY229234__AQQ75475.1__JdFRA1000001-42c__00042
Identity
- Accession:
- KY229234 ↗
- Protein ID:
- AQQ75475.1 ↗
- Kingdom:
- archaea
Quality
86.1
mean pLDDT
Cluster
View cluster (138 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 121-315
Domain cluster:
rep: IMGVR_UViG_3300029881_000391-3300029881-Ga0245307_1000082147__D118-318
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00589.28 best | Phage_integrase | 70.4 | 2.30e-19 | 85.1% | 98.3% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1f44A01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.85 | 72.0 | 7.28e-01 | 87.2% | 99.5% |
| 3nkhA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.84 | 75.0 | 7.19e-01 | 92.8% | 98.2% |
| 5jk0B01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.84 | 71.0 | 7.50e-01 | 86.7% | 99.4% |
| 1aihA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.82 | 64.0 | 6.91e-01 | 90.8% | 91.8% |
| 2a3vA02 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.82 | 69.0 | 6.71e-01 | 87.2% | 96.7% |
| 1ae9A00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.80 | 61.0 | 6.49e-01 | 77.4% | 91.8% |
| 4a8eA02 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.78 | 67.0 | 7.01e-01 | 96.9% | 96.1% |
| 2h7fX02 | 3.90.15.10 | Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 | 0.74 | 67.0 | 6.17e-01 | 95.4% | 88.8% |
| 3uxuA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.65 | 51.0 | 5.63e-01 | 100.0% | 100.0% |
| 1gutA00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.61 | 24.0 | 3.78e-01 | 77.9% | 97.0% |
| 4acoA02 | 1.10.443.20 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Centromere DNA-binding protein complex CBF3 subunit, domain 2 | 0.58 | 53.0 | 4.36e-01 | 96.9% | 96.5% |
| 1jmoA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.54 | 28.0 | 3.09e-01 | 95.9% | 59.3% |
| 4glaC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 25.0 | 3.34e-01 | 74.9% | 86.5% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4940211 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.93 | 79.0 | 8.52e-01 | 86.7% | 100.0% |
| 5028306 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.92 | 81.0 | 8.43e-01 | 89.7% | 98.9% |
| 4964439 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.91 | 81.0 | 7.84e-01 | 92.3% | 98.6% |
| 5002702 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.90 | 80.0 | 8.14e-01 | 91.3% | 93.7% |
| 5016957 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.89 | 71.0 | 7.48e-01 | 81.0% | 100.0% |
| 4453818 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.88 | 61.0 | 7.02e-01 | 70.3% | 98.7% |
| 4007744 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.88 | 76.0 | 7.48e-01 | 88.7% | 100.0% |
| 4637388 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.88 | 74.0 | 7.97e-01 | 91.8% | 99.4% |
| 4181053 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.87 | 77.0 | 7.68e-01 | 90.8% | 96.0% |
| 4004483 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.87 | 78.0 | 7.89e-01 | 91.3% | 96.3% |
| 5059725 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.86 | 76.0 | 7.97e-01 | 92.3% | 98.9% |
| 4965169 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.86 | 70.0 | 6.81e-01 | 83.1% | 96.2% |
| 4994277 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.86 | 75.0 | 7.78e-01 | 89.7% | 98.9% |
| 5000880 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.85 | 75.0 | 7.85e-01 | 93.3% | 98.3% |
| 5061203 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.85 | 74.0 | 7.58e-01 | 90.8% | 96.3% |
| 5076857 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.84 | 69.0 | 7.32e-01 | 93.8% | 94.3% |
| 4475168 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.84 | 76.0 | 7.61e-01 | 93.3% | 95.4% |
| 4380833 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.84 | 68.0 | 7.44e-01 | 90.3% | 99.4% |
| 3271483 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.84 | 67.0 | 6.88e-01 | 83.1% | 98.4% |
| 5027341 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.82 | 64.0 | 7.04e-01 | 80.5% | 96.2% |
| 4998701 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.82 | 66.0 | 6.84e-01 | 82.1% | 93.9% |
| 4966027 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.80 | 71.0 | 7.33e-01 | 93.8% | 97.3% |
| 4928148 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.78 | 65.0 | 7.03e-01 | 90.8% | 100.0% |
| 3599060 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.76 | 58.0 | 5.81e-01 | 79.0% | 91.0% |
| 4992939 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.74 | 62.0 | 6.68e-01 | 98.5% | 100.0% |
| 4954527 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.73 | 71.0 | 6.75e-01 | 100.0% | 97.3% |
| 4954640 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.72 | 68.0 | 6.76e-01 | 96.4% | 100.0% |
| 5058518 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.72 | 66.0 | 6.70e-01 | 96.4% | 96.9% |
| 4961917 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.67 | 61.0 | 6.19e-01 | 95.4% | 97.4% |
| 150341 | 101.1.8.8 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integr_3 | 0.67 | 53.0 | 5.82e-01 | 100.0% | 100.0% |
| 4962166 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.66 | 59.0 | 6.08e-01 | 94.9% | 97.8% |
| 5078248 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.62 | 25.0 | 3.87e-01 | 79.5% | 97.1% |
| 4880118 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.62 | 24.0 | 3.78e-01 | 72.8% | 94.3% |
D2
medium
residues 2-109
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2a3vB01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.85 | 67.0 | 7.21e-01 | 84.3% | 94.7% |
| 4a8eA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.83 | 62.0 | 6.83e-01 | 79.6% | 96.6% |
| 3nrwA00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.82 | 63.0 | 6.47e-01 | 79.6% | 93.3% |
| 2kobA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.76 | 57.0 | 6.10e-01 | 78.7% | 95.7% |
| 1ls1A01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.67 | 39.0 | 4.35e-01 | 71.3% | 70.8% |
| 2gz4A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.65 | 51.0 | 4.17e-01 | 84.3% | 67.5% |
| 3b4qA00 | 1.10.1200.100 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › conserved protein domain from corynebacterium diphtheriae | 0.60 | 39.0 | 4.21e-01 | 78.7% | 79.3% |
| 3djbA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.57 | 46.0 | 4.79e-01 | 86.1% | 100.0% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 46.0 | 4.80e-01 | 89.8% | 97.9% |
| 1dvkA00 | 1.20.940.10 | Mainly Alpha › Up-down Bundle › RNA Binding Protein, Prp18; Chain A › Functional domain of the splicing factor Prp18 | 0.56 | 44.0 | 3.99e-01 | 85.2% | 94.6% |
| 3peuB00 | 1.25.40.510 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › GLE1-like | 0.56 | 45.0 | 3.30e-01 | 86.1% | 80.0% |
| 3hzjA03 | 1.10.472.80 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 | 0.56 | 40.0 | 3.57e-01 | 74.1% | 78.5% |
| 2c0kB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 42.0 | 3.82e-01 | 81.5% | 81.9% |
| 1oj6A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 42.0 | 3.83e-01 | 81.5% | 85.7% |
| 8amqA02 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.55 | 41.0 | 2.93e-01 | 81.5% | 90.9% |
| 1n5uA05 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.54 | 40.0 | 4.03e-01 | 77.8% | 83.9% |
| 1kxpD03 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.53 | 38.0 | 4.11e-01 | 85.2% | 89.8% |
| 1xrhD01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.52 | 38.0 | 3.92e-01 | 75.9% | 100.0% |
| 2zs0A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 38.0 | 3.62e-01 | 80.6% | 80.0% |
| 7zcvA02 | 1.25.40.400 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 46.0 | 3.70e-01 | 99.1% | 61.0% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4938697 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.90 | 66.0 | 7.18e-01 | 75.0% | 93.3% |
| 4931308 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.89 | 80.0 | 7.34e-01 | 94.4% | 86.7% |
| 4964438 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.86 | 74.0 | 7.16e-01 | 90.7% | 90.0% |
| 5055663 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.85 | 79.0 | 7.40e-01 | 100.0% | 89.2% |
| 5080068 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.83 | 65.0 | 6.75e-01 | 81.5% | 88.0% |
| 2319286 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.82 | 66.0 | 6.80e-01 | 84.3% | 93.1% |
| 3956495 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.80 | 67.0 | 6.75e-01 | 88.9% | 88.2% |
| 136582 | 186.1.1.8 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M | 0.76 | 57.0 | 5.93e-01 | 78.7% | 89.0% |
| 3807641 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.58 | 45.0 | 4.00e-01 | 83.3% | 86.9% |
| 4956930 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.57 | 34.0 | 2.69e-01 | 71.3% | 26.2% |
| 3428358 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.57 | 41.0 | 3.45e-01 | 74.1% | 100.0% |
| 5054790 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.56 | 42.0 | 3.75e-01 | 78.7% | 57.4% |
| 5032053 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.55 | 41.0 | 3.92e-01 | 79.6% | 79.2% |
| 4832954 | 109.4.1.1124 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_ANAPC2 | 0.54 | 43.0 | 3.55e-01 | 82.4% | 76.7% |
| 5077207 | 601.7.1.3 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › PaREP1 | 0.53 | 41.0 | 3.70e-01 | 83.3% | 67.7% |
| 3335074 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.53 | 36.0 | 3.46e-01 | 70.4% | 86.9% |
| 4999711 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.52 | 45.0 | 4.18e-01 | 94.4% | 80.0% |
| 5030626 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.52 | 39.0 | 3.81e-01 | 78.7% | 77.5% |
| 4991388 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.51 | 42.0 | 3.64e-01 | 93.5% | 88.3% |
| 2849677 | 129.1.1.10 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › Mannitol_dh_C | 0.51 | 44.0 | 3.79e-01 | 97.2% | 93.2% |
| 4486649 | 109.4.1.954 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_EF3_N | 0.50 | 44.0 | 3.53e-01 | 98.1% | 77.7% |
D3
medium
residues 316-374
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cklA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.55 | 42.0 | 3.70e-01 | 88.1% | 74.5% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3594777 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.75 | 55.0 | 4.67e-01 | 84.7% | 48.4% |
| 3170867 | 3730.1.1.2 ↗ | alpha arrays › CCM3/GCKIII dimerization domain › CCM3/GCKIII dimerization domain › CCM3/GCKIII dimerization domain › FMP23 | 0.68 | 44.0 | 3.60e-01 | 78.0% | 36.4% |
| 3797415 | 375.10.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha | 0.63 | 46.0 | 3.54e-01 | 76.3% | 50.0% |
| 3448510 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.61 | 38.0 | 3.68e-01 | 79.7% | 56.9% |