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KY249644.1__ARB05736.1__X__00001

Bact-Vir

KY249644.1__ARB05736.1__X__00001

Identity

Accession:
KY249644 ↗
Kingdom:
phage

Quality

79.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-86
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.60 50.0 3.48e-01 100.0% 69.1%
5v89A02 1.10.238.200 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Cullin, PONY binding domain 0.60 41.0 3.59e-01 74.2% 70.6%
3vkgA02 1.20.140.100 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Dynein motor heavy chain, linker domain, N-terminal subdomain 0.52 38.0 3.03e-01 82.3% 91.2%
3cgxA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.52 42.0 2.98e-01 96.8% 77.0%
5ucoA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 41.0 3.23e-01 95.2% 49.7%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033827 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.95 90.0 6.96e-01 100.0% 52.5%
D2 high residues 101-115_154-287
PDB
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4oi3A00 3.30.70.3090 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ORF SCO4226, nickel-binding ferredoxin-like monomer 0.51 23.0 2.89e-01 97.3% 69.1%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033826 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.90 56.0 7.08e-01 75.8% 98.9%
D3 high residues 328-521
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05272.18 best VapE-like_dom 184.9 2.00e-54 100.0% 83.9%
D4 high residues 526-646
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hoeA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 37.0 5.16e-01 86.8% 100.0%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 40.0 3.77e-01 89.3% 46.1%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 39.0 4.29e-01 89.3% 65.0%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 39.0 3.78e-01 89.3% 50.0%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 38.0 3.62e-01 89.3% 45.8%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 40.0 4.28e-01 90.1% 66.7%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.67 42.0 4.93e-01 90.1% 92.6%
4xrfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 37.0 3.55e-01 89.3% 45.8%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 37.0 3.96e-01 89.3% 62.5%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 41.0 5.00e-01 95.9% 98.7%
3bz6A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 42.0 5.05e-01 91.7% 100.0%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 37.0 3.59e-01 89.3% 47.5%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 40.0 4.22e-01 90.9% 68.9%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 40.0 4.25e-01 90.1% 70.9%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 38.0 3.83e-01 90.1% 58.3%
1vtnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 42.0 4.48e-01 90.9% 77.5%
5xnsC00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.62 37.0 4.56e-01 89.3% 100.0%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 37.0 3.83e-01 90.1% 62.5%
4g9yA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 38.0 3.68e-01 90.1% 55.9%
1kyzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 38.0 4.11e-01 90.1% 74.8%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 37.0 3.83e-01 90.1% 65.8%
6pcoC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 37.0 3.65e-01 90.1% 58.3%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 36.0 3.63e-01 90.1% 59.5%
1lj9B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 37.0 3.51e-01 90.1% 54.2%
5eriA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 37.0 3.42e-01 90.1% 50.3%
2ch0A01 1.10.10.1180 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAN1, winged-helix domain 0.58 38.0 4.20e-01 97.5% 83.7%
5hvqC01 3.90.1150.220 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.57 36.0 4.28e-01 90.1% 96.2%
3zigA00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.57 33.0 3.89e-01 91.7% 82.9%
2ln3A00 3.30.110.140 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.56 32.0 3.78e-01 91.7% 80.7%
4nzrM03 3.30.110.180 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.55 35.0 3.57e-01 90.1% 64.2%
2cveA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 23.0 3.02e-01 83.5% 69.7%
2k4jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 37.0 3.93e-01 99.2% 81.0%
3zcoA00 1.10.10.2450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.53 42.0 4.15e-01 90.1% 80.3%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3820802 101.1.2.529 alpha arrays › HTH › HTH › winged helix domain › DUF7599 0.72 46.0 4.87e-01 90.1% 70.9%
4458458 101.1.2.39 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.72 44.0 3.30e-01 90.1% 26.1%
3275982 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.72 46.0 3.86e-01 90.9% 38.0%
3990493 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 46.0 5.21e-01 90.9% 86.7%
4493829 101.1.2.39 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.70 43.0 4.71e-01 90.9% 74.0%
3843442 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.70 47.0 4.69e-01 90.9% 66.4%
4928190 101.1.2.26 alpha arrays › HTH › HTH › winged helix domain › HxlR 0.70 38.0 4.47e-01 89.3% 76.2%
3792911 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.69 46.0 4.78e-01 90.9% 71.3%
3174361 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.69 46.0 3.68e-01 90.9% 34.9%
3735293 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.69 48.0 3.75e-01 90.9% 33.5%
4936335 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.68 39.0 4.11e-01 90.9% 61.8%
5010592 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.68 39.0 3.98e-01 89.3% 56.7%
4310506 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.68 47.0 3.81e-01 90.9% 38.2%
4988080 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 38.0 4.85e-01 89.3% 95.7%
3319155 101.1.4.12 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC 0.67 46.0 3.50e-01 90.9% 30.4%
3831895 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.67 46.0 3.52e-01 91.7% 31.3%
2409292 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.67 40.0 4.26e-01 90.1% 68.3%
3483771 101.1.2.394 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.66 46.0 5.15e-01 95.0% 91.6%
4988085 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.66 33.0 4.41e-01 82.6% 95.0%
5049729 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 39.0 4.73e-01 90.1% 94.7%
1146763 101.1.2.72 alpha arrays › HTH › HTH › winged helix domain › Sulfolobus_pRN 0.66 41.0 5.00e-01 95.9% 98.7%
5072660 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 39.0 4.56e-01 89.3% 84.7%
3887336 101.1.4.12 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC 0.65 45.0 3.71e-01 99.2% 38.7%
5068034 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 37.0 3.80e-01 89.3% 58.3%
5048954 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 40.0 4.14e-01 90.1% 65.2%
4964272 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 37.0 3.94e-01 90.1% 63.8%
3723366 101.1.2.533 alpha arrays › HTH › HTH › winged helix domain › WH_CYT4 0.64 40.0 4.33e-01 90.1% 75.0%
4948012 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 37.0 3.85e-01 90.1% 60.0%
2491334 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 39.0 4.50e-01 91.7% 88.2%
3356481 386.1.1.117 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.63 35.0 4.20e-01 94.2% 80.7%
4960288 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.62 39.0 3.41e-01 90.1% 42.9%
5073308 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 39.0 4.59e-01 91.7% 93.8%
3810002 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.62 38.0 4.03e-01 89.3% 67.3%
3648333 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.61 37.0 4.04e-01 90.1% 72.0%
1299892 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.60 38.0 3.96e-01 90.1% 67.5%
3710667 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 45.0 3.53e-01 91.7% 36.5%
3702324 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 44.0 4.82e-01 91.7% 95.0%
4956561 328.9.1.1 a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF 0.59 35.0 4.21e-01 95.0% 88.7%
3355197 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 37.0 4.02e-01 90.1% 75.0%
5082046 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 39.0 4.29e-01 95.9% 83.0%
5049534 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 39.0 4.49e-01 90.1% 95.3%
4994660 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 39.0 4.09e-01 90.1% 74.5%
185814 101.1.4.12 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC 0.58 40.0 4.58e-01 99.2% 100.0%
4998663 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 43.0 4.19e-01 99.2% 70.8%
4978789 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 38.0 4.20e-01 99.2% 86.3%
4679312 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.57 29.0 3.50e-01 84.3% 72.5%
5077445 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 40.0 3.67e-01 90.1% 55.6%
3644266 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 38.0 4.10e-01 90.1% 81.0%
3684722 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.57 41.0 4.45e-01 90.9% 92.0%
3297411 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.56 35.0 3.98e-01 90.1% 84.4%
3493298 101.1.2.106 alpha arrays › HTH › HTH › winged helix domain › Tam41_Mmp37 0.55 42.0 3.72e-01 89.3% 56.5%
3785110 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 44.0 4.27e-01 90.1% 76.3%
3925479 207.1.1.156 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27094 0.55 39.0 3.05e-01 73.6% 92.8%
3168448 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.55 36.0 3.53e-01 90.9% 61.2%
4228350 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.54 30.0 3.86e-01 89.3% 98.5%
3396990 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 35.0 4.12e-01 90.1% 100.0%
3997528 101.1.2.148 alpha arrays › HTH › HTH › winged helix domain › ORC5_C 0.52 43.0 4.08e-01 89.3% 82.8%
3606618 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.51 29.0 3.28e-01 91.7% 74.4%
5034013 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.50 28.0 3.45e-01 87.6% 88.0%