←Back to structures
KY250482.1__APQ42506.1__phi16_gp001__00001
Bact-VirKY250482.1__APQ42506.1__phi16_gp001__00001
Identity
- Accession:
- KY250482 ↗
- Kingdom:
- phage
Quality
80.2
mean pLDDT
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-66
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4cb8A00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.88 | 75.0 | 4.15e-01 | 100.0% | 7.8% |
| 3crvA02 | 1.10.275.30 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › | 0.72 | 55.0 | 3.95e-01 | 89.7% | 29.6% |
| 4c91A02 | 3.20.20.520 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosyl hydrolase family 115 | 0.70 | 56.0 | 3.35e-01 | 100.0% | 12.6% |
| 1is8A01 | 1.10.286.10 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain | 0.68 | 56.0 | 4.95e-01 | 94.9% | 65.0% |
| 2riqA01 | 1.10.20.130 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.68 | 53.0 | 4.43e-01 | 84.6% | 78.8% |
| 3vkhA08 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 50.0 | 2.94e-01 | 89.7% | 48.4% |
| 1wx0A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.64 | 55.0 | 3.51e-01 | 100.0% | 27.0% |
| 2r18A02 | 1.10.8.880 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 | 0.61 | 52.0 | 4.59e-01 | 100.0% | 74.6% |
| 3c1dA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 51.0 | 4.84e-01 | 100.0% | 80.4% |
| 3f2bA05 | 6.10.50.10 | Special › Helix non-globular › Insulin-like, subunit E › | 0.60 | 45.0 | 4.34e-01 | 92.3% | 72.9% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3899274 | 109.4.1.108 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CTNNBL | 0.90 | 77.0 | 4.24e-01 | 100.0% | 6.9% |
| 3885451 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.87 | 71.0 | 6.03e-01 | 92.3% | 55.4% |
| 3512178 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.86 | 75.0 | 4.53e-01 | 100.0% | 16.5% |
| 3705291 | 2004.1.1.197 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_3 | 0.79 | 66.0 | 4.30e-01 | 97.4% | 22.4% |
| 4948317 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.79 | 65.0 | 6.05e-01 | 94.9% | 74.0% |
| 4002851 | 109.4.1.555 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1,Exportin-5 | 0.79 | 64.0 | 3.39e-01 | 92.3% | 3.5% |
| 4038157 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.77 | 62.0 | 5.76e-01 | 94.9% | 70.0% |
| 3922168 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.76 | 66.0 | 5.48e-01 | 100.0% | 58.6% |
| 3873692 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.75 | 65.0 | 5.87e-01 | 100.0% | 74.5% |
| 3691125 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.75 | 63.0 | 4.37e-01 | 100.0% | 34.8% |
| 3250201 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.73 | 61.0 | 5.25e-01 | 100.0% | 61.5% |
| 5058199 | 4070.1.1.2 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 | 0.72 | 56.0 | 3.48e-01 | 100.0% | 15.3% |
| 3610787 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.72 | 61.0 | 3.51e-01 | 100.0% | 10.8% |
| 3816078 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.70 | 51.0 | 3.61e-01 | 82.1% | 25.8% |
| 3697794 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.69 | 55.0 | 4.08e-01 | 100.0% | 32.7% |
| 3966542 | 2486.1.1.0 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase | 0.65 | 49.0 | 3.11e-01 | 100.0% | 15.3% |
D2
high
residues 78-258
Domain cluster:
rep: SR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00297__D46-187