←Back to structures

KY250482.1__APQ42507.1__phi16_gp002__00002

Bact-Vir

KY250482.1__APQ42507.1__phi16_gp002__00002

Identity

Accession:
KY250482 ↗
Kingdom:
phage

Quality

81.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Corynebacterium_phage_phi16

TaxID: 1927022

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-58
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.83 65.0 4.65e-01 88.5% 30.3%
4h33A00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.82 66.0 5.39e-01 88.5% 49.5%
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 57.0 5.03e-01 82.7% 82.9%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.75 57.0 4.55e-01 82.7% 48.0%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.74 53.0 4.46e-01 76.9% 44.4%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.74 55.0 4.56e-01 80.8% 47.3%
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 52.0 4.62e-01 84.6% 53.7%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.69 60.0 4.53e-01 94.2% 42.2%
3ejnA03 1.20.120.840 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SusD-like, tetratrico peptide repeats domain 0.69 47.0 3.60e-01 92.3% 33.3%
4q5nA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.69 51.0 4.00e-01 82.7% 37.5%
5g5gB02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.67 47.0 3.94e-01 75.0% 41.5%
5kbwB00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.66 56.0 3.97e-01 98.1% 34.5%
1u5eA01 6.10.250.220 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.66 46.0 4.60e-01 75.0% 75.5%
1zv1A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.64 51.0 4.93e-01 86.5% 76.3%
4hfkB00 1.20.120.1620 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.58 40.0 3.24e-01 71.2% 51.0%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 40.0 3.66e-01 78.8% 56.3%
1ichA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.56 39.0 3.40e-01 75.0% 47.1%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 40.0 3.56e-01 78.8% 53.1%
3ousA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 41.0 3.65e-01 84.6% 53.7%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3940746 5067.1.1.3 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched 0.83 69.0 4.53e-01 100.0% 23.5%
4100017 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.77 62.0 3.89e-01 88.5% 16.7%
2417935 101.1.2.192 ↗ alpha arrays › HTH › HTH › winged helix domain › B_lactamase-like_C 0.77 55.0 5.00e-01 78.8% 57.1%
3958385 101.1.2.670 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF4194 0.77 54.0 4.35e-01 76.9% 39.0%
5023625 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.75 61.0 4.89e-01 88.5% 48.0%
3507841 864.1.1.2 ↗ a+b two layers › DLC › DLC › DLC › Tctex-1 0.74 55.0 4.11e-01 78.8% 33.6%
3582958 864.1.1.2 ↗ a+b two layers › DLC › DLC › DLC › Tctex-1 0.73 54.0 4.08e-01 78.8% 35.0%
3738459 6088.1.1.1 ↗ alpha arrays › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › 4HB 0.73 52.0 4.54e-01 76.9% 50.0%
4983663 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.72 55.0 4.59e-01 80.8% 54.8%
3711095 3075.1.1.0 ↗ a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA 0.70 50.0 4.48e-01 88.5% 53.3%
224416 3730.1.1.1 ↗ alpha arrays › CCM3/GCKIII dimerization domain › CCM3/GCKIII dimerization domain › CCM3/GCKIII dimerization domain › PDCD10_N 0.69 46.0 4.18e-01 84.6% 52.2%
5040824 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.69 60.0 4.28e-01 98.1% 92.2%
4025289 192.29.1.197 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF4110 0.68 57.0 4.96e-01 100.0% 63.5%
3624592 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 55.0 4.20e-01 100.0% 38.5%
3489683 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.63 49.0 4.57e-01 96.2% 70.7%
4567823 6088.1.1.1 ↗ alpha arrays › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › 4HB 0.62 53.0 4.29e-01 96.2% 85.0%
3036753 397.7.1.0 ↗ few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 0.59 42.0 4.13e-01 76.9% 73.2%