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KY250482.1__APQ42512.1__phi16_gp007__00007

Bact-Vir

KY250482.1__APQ42512.1__phi16_gp007__00007

Identity

Accession:
KY250482 ↗
Kingdom:
phage

Quality

81.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Corynebacterium_phage_phi16

TaxID: 1927022

Cluster

View cluster (25 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 27-65_89-134
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2d7vB00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.54 31.0 2.60e-01 70.6% 29.4%
1pu1A00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.53 31.0 3.07e-01 100.0% 52.7%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4988094 2485.3.1.18 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.84 76.0 5.29e-01 100.0% 32.5%
3503042 7529.1.1.0 ↗ a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like 0.60 31.0 2.85e-01 74.1% 37.4%
4001646 206.1.3.12 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › TTL 0.59 36.0 2.97e-01 97.6% 31.9%
3798608 2492.1.1.4 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.59 39.0 2.60e-01 98.8% 17.1%
3999192 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 34.0 3.54e-01 100.0% 61.3%
4937776 2484.1.1.339 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › acVLRF1 0.58 38.0 3.52e-01 95.3% 53.3%
3615383 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.55 38.0 3.01e-01 71.8% 96.0%
4976198 878.1.1.1 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.52 33.0 3.37e-01 100.0% 64.7%
5074340 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.51 32.0 2.76e-01 70.6% 36.4%
D2 medium residues 135-314
PDB
Domain cluster: rep: DQ340064.2__ABC61276.1__X__00022__D272-425
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e0zC03 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.85 45.0 6.30e-01 93.9% 100.0%
2pk8A00 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.78 41.0 5.67e-01 88.3% 98.9%
1ohgA02 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.77 45.0 5.92e-01 93.3% 100.0%
3bjqA00 3.90.1690.10 Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain 0.73 69.0 5.73e-01 100.0% 62.2%
1yueA03 3.30.2320.40 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › 0.65 43.0 5.26e-01 93.9% 100.0%
2x49A01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.61 25.0 3.43e-01 70.0% 71.9%
2dltA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 27.0 3.41e-01 93.3% 79.2%
1pbyA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 23.0 3.45e-01 93.9% 97.4%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4988094 2485.3.1.18 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.84 74.0 6.43e-01 98.3% 64.3%
4873245 2485.3.1.2 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 0.78 55.0 6.45e-01 88.3% 100.0%
333200 2485.3.1.1 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E 0.75 71.0 5.83e-01 100.0% 62.7%
2639625 2485.3.1.18 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.73 63.0 5.35e-01 99.4% 57.9%
4241362 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.73 68.0 5.60e-01 98.9% 59.7%
2989356 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.71 67.0 5.57e-01 99.4% 62.6%
2989372 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.71 66.0 5.43e-01 98.3% 59.9%
5083777 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.71 62.0 5.11e-01 99.4% 55.0%
4954548 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.69 65.0 5.54e-01 99.4% 66.2%
2989363 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.69 65.0 5.31e-01 99.4% 62.0%
3952452 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.68 62.0 5.16e-01 100.0% 58.7%
3977985 2485.3.1.18 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.66 61.0 4.79e-01 97.8% 50.0%
5081698 2485.3.1.18 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.66 62.0 5.10e-01 99.4% 61.0%
4995674 2485.3.1.5 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp23 0.66 61.0 5.33e-01 100.0% 69.0%