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KY250482.1__APQ42516.1__phi16_gp011__00011

Bact-Vir

KY250482.1__APQ42516.1__phi16_gp011__00011

Identity

Accession:
KY250482 ↗
Kingdom:
phage

Quality

90.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-89
PDB
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.70 54.0 4.21e-01 84.1% 87.1%
2fb0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 58.0 5.26e-01 100.0% 68.1%
2yweA03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.68 50.0 4.78e-01 91.3% 67.1%
1bp1A01 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.68 60.0 4.41e-01 98.6% 94.4%
1x7vA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 54.0 4.89e-01 100.0% 64.3%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.66 57.0 4.89e-01 100.0% 65.3%
3go9A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.66 56.0 4.04e-01 100.0% 37.8%
2cveA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 45.0 4.56e-01 89.9% 75.8%
4e1oA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.65 52.0 4.63e-01 91.3% 61.2%
4gs5A02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.65 54.0 4.79e-01 100.0% 63.8%
6j09A02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.65 44.0 4.26e-01 71.0% 100.0%
3c19A01 3.30.70.1380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transcriptional regulatory protein pf0864 domain like 0.64 52.0 4.74e-01 95.7% 65.7%
2gffA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 52.0 4.77e-01 100.0% 66.7%
2yvsA02 3.30.70.2560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 41.0 4.41e-01 91.3% 78.0%
3fmbA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 53.0 4.80e-01 100.0% 67.0%
2mq8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.64 54.0 4.72e-01 100.0% 62.5%
1vehA01 3.30.300.130 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Fe-S cluster assembly (FSCA) 0.63 50.0 4.94e-01 98.6% 82.7%
1qz9A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.63 55.0 4.40e-01 100.0% 62.2%
2x8xX02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.62 42.0 4.11e-01 71.0% 100.0%
2z51A02 3.30.300.130 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Fe-S cluster assembly (FSCA) 0.62 48.0 4.83e-01 95.7% 84.7%
6ks6a01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.59 46.0 3.07e-01 84.1% 36.5%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.59 37.0 3.74e-01 85.5% 62.0%
1mkiA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.59 48.0 3.61e-01 89.9% 94.2%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.58 51.0 4.48e-01 100.0% 73.1%
3iuzA00 3.10.180.50 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 0.58 47.0 3.08e-01 89.9% 84.7%
2nrqA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.57 47.0 3.86e-01 95.7% 66.4%
6le1A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 45.0 4.56e-01 91.3% 92.6%
7bjkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.57 38.0 3.33e-01 71.0% 44.2%
7sxqA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 40.0 2.73e-01 75.4% 82.7%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.56 39.0 3.90e-01 76.8% 70.4%
2ogkD00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.56 45.0 3.71e-01 95.7% 64.1%
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 48.0 3.41e-01 97.1% 77.4%
6canA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 47.0 3.12e-01 100.0% 34.8%
3tf8B00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.55 45.0 3.38e-01 94.2% 40.2%
1aroP05 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.55 46.0 3.39e-01 100.0% 49.3%
4pcqA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.54 40.0 3.81e-01 95.7% 66.7%
4gs5A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.52 44.0 3.07e-01 95.7% 76.2%
2p92A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.52 46.0 4.15e-01 100.0% 82.1%
1uwdA00 3.30.300.130 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Fe-S cluster assembly (FSCA) 0.51 43.0 3.88e-01 100.0% 68.6%
5xc5A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 35.0 2.72e-01 72.5% 47.9%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.51 40.0 3.45e-01 87.0% 86.5%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 43.0 3.04e-01 97.1% 61.6%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.50 40.0 3.17e-01 92.8% 98.2%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3800293 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.75 66.0 5.99e-01 100.0% 77.4%
3164241 304.28.1.4 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st 0.73 58.0 5.34e-01 100.0% 66.7%
3280788 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.73 61.0 5.55e-01 100.0% 68.4%
3587631 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.71 47.0 3.70e-01 100.0% 33.6%
3627409 6166.1.1.1 alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 0.71 44.0 3.14e-01 100.0% 22.0%
3961062 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.70 58.0 5.35e-01 100.0% 71.1%
4133554 304.24.1.21 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C+EFG_III 0.68 51.0 3.78e-01 95.7% 30.0%
4929400 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.68 51.0 4.84e-01 89.9% 67.9%
4089543 304.24.1.21 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C+EFG_III 0.67 50.0 3.70e-01 95.7% 28.5%
4063927 304.24.1.1 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.67 50.0 3.75e-01 95.7% 30.0%
3207719 2002.1.1.262 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › SGT1 0.67 58.0 4.38e-01 100.0% 41.1%
4937095 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.67 58.0 4.95e-01 98.6% 71.3%
4928095 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.67 55.0 4.66e-01 100.0% 53.8%
4388283 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.65 51.0 5.15e-01 89.9% 85.7%
4339025 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.65 56.0 3.99e-01 100.0% 91.8%
1949629 327.18.1.1 a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A › Ribosomal_S7e 0.64 50.0 4.45e-01 85.5% 59.4%
4366330 304.20.1.5 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › tRNA_synt_2f 0.64 56.0 4.27e-01 100.0% 41.8%
4982514 304.162.1.0 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.64 51.0 5.00e-01 91.3% 82.7%
3841538 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.63 49.0 4.40e-01 95.7% 60.0%
5076573 304.43.1.0 a+b two layers › Alpha-beta plaits › Hypothetical protein TT1725 › Hypothetical protein TT1725 0.63 51.0 4.91e-01 91.3% 80.0%
3853273 327.11.2.27 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin 0.62 42.0 4.65e-01 79.7% 98.0%
3697123 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.62 53.0 4.78e-01 100.0% 69.0%
4067342 5069.1.1.15 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_C_asm 0.61 53.0 3.42e-01 100.0% 58.5%
4882106 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.61 53.0 4.73e-01 100.0% 82.8%
4809699 3781.1.1.1 a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N 0.60 38.0 3.93e-01 71.0% 67.7%
4964003 241.1.1.29 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › DUF5813 0.60 51.0 4.05e-01 100.0% 48.4%
5060701 2011.1.1.8 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.60 52.0 3.47e-01 97.1% 32.5%
5006044 206.1.1.268 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF6206 0.60 51.0 3.43e-01 100.0% 40.3%
3598920 7573.1.1.0 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like 0.59 52.0 3.66e-01 100.0% 73.3%
3195155 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.59 47.0 4.72e-01 95.7% 90.0%
4087557 7581.1.1.1 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N 0.59 44.0 2.96e-01 82.6% 85.4%
4212883 7573.1.1.4 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.59 51.0 3.70e-01 100.0% 78.0%
1421547 327.10.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › Ribosomal_S7e 0.59 45.0 4.23e-01 87.0% 68.2%
5032335 7581.1.1.1 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N 0.59 45.0 3.00e-01 85.5% 84.6%
3690229 7573.1.1.4 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.58 51.0 3.63e-01 100.0% 74.4%
3484153 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.58 49.0 2.87e-01 100.0% 69.5%
3888499 7573.1.1.4 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.57 50.0 3.55e-01 100.0% 71.1%
5068241 7577.1.1.10 a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › GDC-P 0.57 45.0 3.06e-01 91.3% 75.1%
4983137 882.1.1.4 a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding 0.57 47.0 3.88e-01 95.7% 71.1%
3329735 327.11.2.37 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_DEAH11_1st 0.57 45.0 4.54e-01 89.9% 88.6%
3253252 312.1.1.9 a+b three layers › HIT-like › HIT-related › HIT-related › DUF3605 0.56 40.0 3.14e-01 76.8% 33.8%
4023956 3871.1.1.1 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.56 47.0 3.85e-01 92.8% 80.8%
3695634 7573.1.1.4 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.56 49.0 3.45e-01 97.1% 75.1%
4399128 7581.1.1.30 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ketoacyl-synt, Thiolase_C 0.55 42.0 2.73e-01 87.0% 57.6%
4015000 7573.1.1.0 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like 0.55 48.0 3.45e-01 98.6% 77.6%
3574069 604.12.1.62 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DuoxA 0.55 39.0 3.23e-01 73.9% 78.4%
3835500 192.15.1.163 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › PF27048 0.54 39.0 4.16e-01 75.4% 86.7%
3519143 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.54 47.0 3.11e-01 100.0% 81.6%
3266302 543.1.1.0 few secondary structure elements › Frizzled cysteine-rich domain-related › Frizzled cysteine-rich domain-related › Frizzled cysteine-rich domain-related 0.54 43.0 3.41e-01 91.3% 52.5%
3318217 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.54 42.0 4.01e-01 84.1% 76.2%
3668727 263.1.1.6 a+b three layers › SRF-like › SRF-like › SRF-like › PF27048 0.54 40.0 3.70e-01 76.8% 62.4%
4274656 263.1.1.0 a+b three layers › SRF-like › SRF-like › SRF-like 0.54 38.0 3.11e-01 82.6% 37.1%
4968695 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.54 46.0 3.56e-01 97.1% 91.3%
3700547 109.4.1.22 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.53 41.0 2.37e-01 82.6% 9.8%
3742561 7573.1.1.4 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.53 45.0 3.30e-01 100.0% 72.1%
3841567 7573.1.1.4 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.52 45.0 3.21e-01 97.1% 64.2%
3986225 101.1.9.32 alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.52 40.0 2.96e-01 88.4% 29.3%
4222853 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.52 43.0 3.71e-01 94.2% 73.0%
4033043 616.1.1.41 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Terminase_4 0.52 37.0 3.45e-01 76.8% 100.0%
3916165 633.23.1.22 alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.52 42.0 3.25e-01 94.2% 88.0%
4028937 109.4.1.1255 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.52 40.0 2.32e-01 84.1% 8.8%
3891434 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.52 42.0 3.42e-01 92.8% 85.0%
3322159 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.51 43.0 3.66e-01 92.8% 60.9%
3303720 3336.1.1.1 alpha complex topology › plant-specific ROP nucleotide exchanger (PRONE) domain › plant-specific ROP nucleotide exchanger (PRONE) domain › plant-specific ROP nucleotide exchanger (PRONE) domain › PRONE 0.51 39.0 2.53e-01 87.0% 79.2%
3593808 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.51 41.0 3.64e-01 88.4% 88.0%
3205634 630.1.1.0 a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain 0.51 40.0 3.11e-01 94.2% 56.8%
3818050 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.50 42.0 4.02e-01 92.8% 88.7%
3471111 7573.1.1.4 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.50 42.0 2.94e-01 92.8% 72.9%