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KY250482.1APQ42523.1phi16_gp018__00018

Bact-Vir

KY250482.1__APQ42523.1__phi16_gp018__00018

Identity

Accession:: KY250482 ↗
Kingdom:: phage

Quality

84.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Corynebacterium_phage_phi16

TaxID: 1927022

Cluster

View cluster (21 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-142

PDB

Domain cluster: representative

CATH (17)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1a7sA02	2.40.10.10	Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases	0.70	42.0	4.70e-01	85.4%	77.1%
2q9kA00	2.30.110.10	Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A	0.65	44.0	4.30e-01	87.6%	63.3%
4kktA02	2.40.30.170	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain	0.64	40.0	4.44e-01	80.3%	79.0%
1k28D03	2.40.30.150	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3	0.64	43.0	5.11e-01	83.9%	100.0%
1qz8A01	2.40.10.250	Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9	0.63	38.0	4.28e-01	84.7%	78.1%
5c94A00	2.40.10.250	Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9	0.62	37.0	4.01e-01	84.7%	69.0%
3ofkA00	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.57	33.0	2.93e-01	91.2%	37.7%
3bpkA01	2.30.110.10	Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A	0.56	47.0	4.28e-01	88.3%	75.4%
6ue9L02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.56	31.0	3.29e-01	71.5%	60.7%
3io1A02	3.30.70.360	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.55	33.0	3.60e-01	76.6%	69.8%
2ptfA01	2.30.110.10	Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A	0.54	44.0	4.28e-01	86.9%	78.9%
5yyfA00	2.60.40.1970	Mainly Beta › Sandwich › Immunoglobulin-like › YEATS domain	0.54	31.0	3.18e-01	86.1%	55.8%
1opoA02	2.60.40.1780	Mainly Beta › Sandwich › Immunoglobulin-like › Carmovirus coat protein	0.54	30.0	3.40e-01	89.8%	70.9%
1cg2A02	3.30.70.360	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.53	31.0	3.46e-01	74.5%	71.8%
2rb7A02	3.30.70.360	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.53	30.0	3.41e-01	76.6%	72.0%
4m4xA00	3.30.450.20	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain	0.52	36.0	3.74e-01	70.8%	94.4%
6mv2A01	2.60.40.790	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.51	30.0	3.46e-01	75.2%	79.4%

ECOD (34)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3968432	1.1.5.0 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel	0.70	44.0	4.94e-01	89.1%	81.9%
3224340	1.1.17.8 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316	0.68	52.0	4.28e-01	89.1%	44.5%
4059301	1.1.13.47 ↗	beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like	0.68	52.0	5.76e-01	86.1%	100.0%
3546177	1.1.17.1 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin	0.67	45.0	3.71e-01	90.5%	38.7%
4441129	1.1.7.91 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940	0.67	41.0	4.35e-01	79.6%	68.3%
4057590	1.1.5.86 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN3	0.67	46.0	4.62e-01	88.3%	68.6%
4565791	1.1.7.87 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954	0.67	37.0	4.42e-01	77.4%	81.1%
4319057	1.1.5.25 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ	0.66	44.0	4.73e-01	89.1%	79.1%
4954552	1.1.5.0 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel	0.65	55.0	5.26e-01	90.5%	93.1%
3265698	1.1.13.66 ↗	beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dicty_CAD	0.65	43.0	4.98e-01	85.4%	95.8%
5002750	1.1.13.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins	0.65	48.0	5.33e-01	86.9%	100.0%
3945834	1.1.7.79 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_RND	0.64	38.0	4.32e-01	75.9%	79.0%
4616814	1.1.7.79 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_RND	0.62	38.0	4.35e-01	77.4%	83.0%
5079559	1.1.13.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins	0.61	49.0	5.25e-01	89.8%	100.0%
3590380	1.1.13.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins	0.60	50.0	4.61e-01	89.8%	81.1%
4157825	1.1.13.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins	0.59	51.0	5.22e-01	90.5%	96.2%
4096792	1.1.5.10 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct	0.58	48.0	4.16e-01	87.6%	66.8%
3696371	1.1.5.10 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct	0.58	48.0	4.02e-01	87.6%	61.4%
3925093	1.1.17.0 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2	0.58	45.0	3.61e-01	90.5%	41.9%
3602499	1.1.5.17 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N	0.58	45.0	4.67e-01	86.9%	86.9%
3535347	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.56	40.0	4.33e-01	81.8%	87.0%
3622133	1.1.9.5 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg	0.56	42.0	3.43e-01	83.2%	42.8%
3942090	1.1.5.77 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube	0.55	47.0	4.46e-01	92.0%	88.5%
3501491	1.1.5.0 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel	0.55	43.0	4.42e-01	98.5%	85.2%
4968263	1.1.5.91 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_C	0.54	44.0	3.77e-01	87.6%	63.2%
4988254	1.1.5.17 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N	0.53	43.0	3.97e-01	86.9%	69.4%
5039454	223.1.1.0 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains	0.53	32.0	3.33e-01	93.4%	62.3%
4214302	1.1.9.5 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg	0.52	40.0	3.44e-01	81.0%	65.5%
5067070	1.1.5.17 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N	0.52	43.0	4.27e-01	86.9%	88.6%
3687001	223.1.1.0 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains	0.51	35.0	3.55e-01	92.0%	67.9%
4987575	304.25.1.1 ↗	a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer	0.51	31.0	3.42e-01	78.8%	74.5%
3369437	1.1.9.5 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg	0.51	40.0	3.30e-01	83.9%	46.0%
3985962	223.1.1.53 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_6	0.51	36.0	3.71e-01	74.5%	79.3%
3501988	304.102.1.7 ↗	a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C	0.50	35.0	2.86e-01	71.5%	53.5%

D2 high residues 146-289

PDB

Domain cluster: rep: KU613353.1__AMO43797.1__PBI_CATALINA_30__00029__D130-288

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2wzpR02	3.55.50.50	Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Phage tail base-plate attachment protein, domain D4	0.63	41.0	4.74e-01	99.3%	93.9%
2bb6A02	2.170.130.30	Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 ›	0.53	27.0	3.02e-01	87.5%	60.4%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1159166	221.1.1.50 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF4430	0.57	29.0	3.29e-01	80.6%	61.1%