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KY250482.1__APQ42543.1__phi16_gp040__00040
Bact-VirKY250482.1__APQ42543.1__phi16_gp040__00040
Identity
- Accession:
- KY250482 ↗
- Kingdom:
- phage
Quality
81.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-45
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ex6A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.86 | 59.0 | 5.02e-01 | 72.1% | 46.3% |
| 1tafB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.84 | 75.0 | 6.37e-01 | 100.0% | 61.4% |
| 2w43A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.82 | 63.0 | 5.79e-01 | 86.0% | 64.9% |
| 4g9pA01 | 3.20.20.20 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like | 0.80 | 67.0 | 4.10e-01 | 100.0% | 15.0% |
| 5hb0D01 | 1.20.120.1880 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleoporin, helical C-terminal domain | 0.80 | 60.0 | 3.67e-01 | 86.0% | 13.9% |
| 1sxjA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.79 | 59.0 | 4.99e-01 | 81.4% | 48.6% |
| 2hszA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.78 | 67.0 | 5.58e-01 | 100.0% | 56.0% |
| 1kqpA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.78 | 65.0 | 4.02e-01 | 100.0% | 25.8% |
| 1v1gA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.78 | 66.0 | 4.28e-01 | 97.7% | 24.5% |
| 3fghA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.77 | 62.0 | 5.24e-01 | 86.0% | 83.6% |
| 2x4hA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 59.0 | 4.14e-01 | 83.7% | 58.1% |
| 3d0wA00 | 1.10.760.20 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Protein of unknown function DUF3243 | 0.74 | 54.0 | 4.36e-01 | 83.7% | 39.5% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.74 | 51.0 | 4.41e-01 | 72.1% | 49.3% |
| 6p10B02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.74 | 66.0 | 5.14e-01 | 100.0% | 97.8% |
| 3vw4A01 | 1.10.340.50 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.74 | 61.0 | 4.93e-01 | 100.0% | 47.8% |
| 4mspB02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.73 | 58.0 | 4.98e-01 | 95.3% | 69.3% |
| 3it4B01 | 3.30.2330.10 | Alpha Beta › 2-Layer Sandwich › arginine biosynthesis bifunctional protein fold › arginine biosynthesis bifunctional protein suprefamily | 0.72 | 62.0 | 5.10e-01 | 97.7% | 74.7% |
| 2fdrA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.72 | 52.0 | 4.66e-01 | 93.0% | 53.7% |
| 5h0pA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.71 | 53.0 | 4.05e-01 | 83.7% | 39.2% |
| 2f93B00 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.70 | 53.0 | 5.08e-01 | 93.0% | 70.6% |
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 55.0 | 4.78e-01 | 86.0% | 62.1% |
| 1g2rA00 | 3.30.1230.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like | 0.70 | 59.0 | 4.67e-01 | 97.7% | 46.8% |
| 2ew2A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.69 | 52.0 | 3.75e-01 | 100.0% | 27.6% |
| 6jrpA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.69 | 57.0 | 4.98e-01 | 88.4% | 95.1% |
| 1knzA01 | 6.10.280.20 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain | 0.69 | 56.0 | 4.41e-01 | 100.0% | 43.1% |
| 6j09A02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.69 | 49.0 | 4.05e-01 | 76.7% | 65.4% |
| 3fynA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.68 | 58.0 | 4.00e-01 | 97.7% | 65.8% |
| 2np2A00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.67 | 55.0 | 4.31e-01 | 97.7% | 81.4% |
| 2i44B00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.67 | 57.0 | 3.40e-01 | 97.7% | 22.8% |
| 2h92A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 53.0 | 3.51e-01 | 100.0% | 21.8% |
| 1axdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.66 | 48.0 | 3.60e-01 | 83.7% | 31.7% |
| 4dqnA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.64 | 53.0 | 3.67e-01 | 100.0% | 27.2% |
| 1u8xX01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.64 | 46.0 | 3.16e-01 | 79.1% | 21.7% |
| 1gakA00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.63 | 51.0 | 3.75e-01 | 100.0% | 32.1% |
| 1nrwA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.63 | 45.0 | 3.18e-01 | 76.7% | 86.9% |
| 3u9rB02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.62 | 51.0 | 3.23e-01 | 100.0% | 18.3% |
| 3tw6B03 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.58 | 46.0 | 2.63e-01 | 93.0% | 9.3% |
| 3gz5B02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 40.0 | 3.56e-01 | 86.0% | 71.6% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4955558 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.90 | 66.0 | 5.02e-01 | 79.1% | 35.8% |
| 3862143 | 148.1.1.7 ↗ | alpha arrays › Histone-like › Histone-related › Histone › TAF | 0.89 | 78.0 | 5.63e-01 | 100.0% | 36.5% |
| 3198609 | 2003.1.5.67 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 | 0.88 | 80.0 | 4.77e-01 | 100.0% | 15.6% |
| 3643664 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.87 | 79.0 | 6.40e-01 | 97.7% | 56.0% |
| 4974262 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.87 | 64.0 | 5.68e-01 | 81.4% | 56.7% |
| 3519357 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.86 | 64.0 | 5.50e-01 | 81.4% | 52.3% |
| 3643488 | 192.15.1.11 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › CemA | 0.86 | 74.0 | 6.24e-01 | 100.0% | 57.3% |
| 2776079 | 3787.1.1.0 ↗ | alpha bundles › HAD superfamily helical bundle insertion domain | 0.85 | 66.0 | 6.05e-01 | 86.0% | 64.9% |
| 3911815 | 108.1.1.97 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 | 0.85 | 70.0 | 5.79e-01 | 93.0% | 52.0% |
| 3989754 | 592.2.1.0 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like | 0.85 | 68.0 | 5.80e-01 | 90.7% | 55.7% |
| 4982784 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.83 | 61.0 | 5.44e-01 | 81.4% | 56.7% |
| 4660623 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.80 | 52.0 | 4.03e-01 | 93.0% | 32.2% |
| 3506395 | 162.1.1.0 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD | 0.79 | 68.0 | 5.09e-01 | 100.0% | 69.1% |
| 3518379 | 3502.1.1.1 ↗ | alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein › YebG | 0.79 | 56.0 | 5.22e-01 | 90.7% | 60.0% |
| 3209229 | 3877.1.1.1 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP | 0.79 | 68.0 | 4.18e-01 | 100.0% | 16.6% |
| 3976839 | 5069.1.3.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits | 0.76 | 64.0 | 4.98e-01 | 100.0% | 89.0% |
| 3174002 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.76 | 56.0 | 5.19e-01 | 81.4% | 63.6% |
| 5048919 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.74 | 57.0 | 5.17e-01 | 86.0% | 63.3% |
| 3674363 | 2004.1.1.44 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PRK | 0.73 | 63.0 | 4.42e-01 | 100.0% | 32.9% |
| 1904338 | 612.1.1.4 ↗ | alpha arrays › Retroviral matrix proteins › Retroviral matrix proteins › Retroviral matrix proteins › Gag_p10 | 0.73 | 60.0 | 4.75e-01 | 97.7% | 45.1% |
| 3368926 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.71 | 55.0 | 4.84e-01 | 90.7% | 56.9% |
| 3654648 | 103.9.1.0 ↗ | alpha arrays › RuvA-C › RanGAP2 N-terminal domain › RanGAP2 N-terminal domain | 0.68 | 59.0 | 5.09e-01 | 100.0% | 61.4% |
| 3970080 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.67 | 55.0 | 3.87e-01 | 97.7% | 65.5% |
| 4033780 | 3012.1.1.4 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3 | 0.67 | 57.0 | 4.14e-01 | 100.0% | 40.8% |
| 5044210 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 57.0 | 4.92e-01 | 100.0% | 62.9% |
| 3287685 | 4993.1.1.1 ↗ | extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › GatC | 0.66 | 53.0 | 4.32e-01 | 100.0% | 48.4% |
| 3469758 | 3787.3.1.1 ↗ | alpha bundles › HAD superfamily helical bundle insertion domain › Insertion domain in cytosolic IMP-GMP specific 5'-nucleotidase › Insertion domain in cytosolic IMP-GMP specific 5'-nucleotidase › 5_nucleotid | 0.65 | 51.0 | 4.05e-01 | 100.0% | 41.8% |
| 5074335 | 633.4.1.0 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor | 0.65 | 58.0 | 4.22e-01 | 97.7% | 59.6% |
| 5004958 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.65 | 49.0 | 4.67e-01 | 88.4% | 72.7% |
| 3590474 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.65 | 54.0 | 4.44e-01 | 97.7% | 56.5% |
| 4107418 | 4993.1.1.1 ↗ | extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › GatC | 0.65 | 52.0 | 4.25e-01 | 100.0% | 44.2% |
| 4678175 | 7579.1.1.89 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, BD-FAE | 0.64 | 51.0 | 2.87e-01 | 93.0% | 7.2% |
| 4669947 | 4993.1.1.0 ↗ | extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit | 0.64 | 51.0 | 4.25e-01 | 100.0% | 46.7% |
| 4511716 | 7579.1.1.101 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, Abhydrolase_3, BD-FAE | 0.64 | 53.0 | 3.02e-01 | 100.0% | 7.8% |
| 3809576 | 103.4.1.5 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 | 0.63 | 50.0 | 4.57e-01 | 100.0% | 66.2% |
| 4507743 | 2003.1.1.76 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › SDH_C | 0.63 | 53.0 | 3.54e-01 | 95.3% | 93.4% |
| 4300466 | 4993.1.1.1 ↗ | extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › GatC | 0.63 | 50.0 | 4.03e-01 | 100.0% | 42.0% |
| 4177268 | 2005.1.1.47 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase, tRNA_Me_trans | 0.62 | 49.0 | 3.06e-01 | 86.0% | 67.9% |