←Back to structures
KY271398.1__ARB15673.1__X__00002
Bact-VirKY271398.1__ARB15673.1__X__00002
Identity
- Accession:
- KY271398 ↗
- Kingdom:
- phage
Quality
90.8
mean pLDDT
Taxonomy
TaxID: 1960658
Cluster
View cluster (12 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-189_298-348
Domain cluster:
rep: KU517658.1__AMB17415.1__HMT_3__00003__D3-163_284-310
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3eliA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 33.0 | 4.07e-01 | 74.9% | 100.0% |
| 3b8oA01 | 3.30.1890.10 | Alpha Beta › 2-Layer Sandwich › Bacterial polysaccharide co-polymerase-like › FepE-like | 0.51 | 39.0 | 4.09e-01 | 79.6% | 99.5% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.51 | 28.0 | 3.34e-01 | 80.0% | 78.7% |
| 5azpA02 | 2.20.200.10 | Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.50 | 19.0 | 3.19e-01 | 82.6% | 98.8% |
| 2j3tD01 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.50 | 24.0 | 3.11e-01 | 91.9% | 78.4% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5075730 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.62 | 32.0 | 4.35e-01 | 76.2% | 98.3% |
| 4997345 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.61 | 33.0 | 4.47e-01 | 78.3% | 100.0% |
| 3967083 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.52 | 20.0 | 3.01e-01 | 95.3% | 81.1% |
| 5019455 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.50 | 36.0 | 3.99e-01 | 73.6% | 99.5% |
| 3182024 | 11.8.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like | 0.50 | 29.0 | 3.69e-01 | 82.6% | 95.0% |
D2
high
residues 193-292
Domain cluster:
rep: MK967384.1__QDM56388.1__SEA_SIDIOUS_41__00041__D153-260
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF15931.11 best | DUF4747 | 25.0 | 1.50e-05 | 97.0% | 30.3% |
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jveA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.69 | 33.0 | 3.82e-01 | 83.0% | 62.0% |
| 1e0bA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.63 | 28.0 | 3.55e-01 | 99.0% | 68.9% |
| 2qh7B01 | 3.40.5.90 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › CDGSH iron-sulfur domain, mitoNEET-type | 0.58 | 26.0 | 3.51e-01 | 81.0% | 85.1% |
| 1gr0A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.56 | 40.0 | 4.27e-01 | 99.0% | 88.1% |
| 1tr0A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 38.0 | 3.81e-01 | 72.0% | 91.5% |
| 3w5mA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 49.0 | 3.92e-01 | 100.0% | 58.4% |
| 3q48A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 38.0 | 4.13e-01 | 98.0% | 89.2% |
| 3znuA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.53 | 37.0 | 3.87e-01 | 74.0% | 89.4% |
| 3kfwX02 | 3.30.70.2650 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 33.0 | 3.61e-01 | 73.0% | 76.8% |
| 3ktaA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 44.0 | 3.68e-01 | 89.0% | 73.8% |
| 2vr3B02 | 2.60.40.1290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 46.0 | 3.97e-01 | 99.0% | 98.1% |
| 1y8tA03 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.51 | 39.0 | 4.17e-01 | 100.0% | 93.2% |
| 3cjrB01 | 3.30.1550.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain | 0.51 | 29.0 | 3.36e-01 | 99.0% | 78.6% |
| 3a7sA00 | 3.40.532.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase | 0.51 | 41.0 | 3.30e-01 | 88.0% | 85.8% |
| 1u0sA00 | 3.30.70.1110 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Histidine kinase CheA-like, P2 response regulator-binding domain | 0.51 | 36.0 | 3.77e-01 | 74.0% | 100.0% |
| 5wm1A05 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.51 | 41.0 | 3.96e-01 | 89.0% | 80.3% |
| 5h80B03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 39.0 | 3.06e-01 | 86.0% | 44.6% |
| 1ix2A00 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 44.0 | 4.40e-01 | 98.0% | 93.1% |
| 3t0qA00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.51 | 45.0 | 3.21e-01 | 100.0% | 59.9% |
| 1t4aA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.51 | 38.0 | 4.13e-01 | 79.0% | 100.0% |
| 3gqcC04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.50 | 41.0 | 3.91e-01 | 89.0% | 78.3% |
| 4kg0A01 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.50 | 39.0 | 3.46e-01 | 85.0% | 98.7% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4965849 | 3435.1.1.9 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › DUF4747 | 0.72 | 62.0 | 4.57e-01 | 96.0% | 36.9% |
| 5036063 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.68 | 39.0 | 3.22e-01 | 87.0% | 31.1% |
| None | — | 0.60 | 36.0 | 2.81e-01 | 85.0% | 26.8% | |
| 4986508 | 5067.1.1.4 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL | 0.60 | 44.0 | 3.06e-01 | 79.0% | 55.1% |
| 3738773 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.60 | 32.0 | 4.08e-01 | 88.0% | 94.5% |
| 3929431 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 52.0 | 3.55e-01 | 100.0% | 63.8% |
| 3735339 | 141.1.1.0 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases | 0.56 | 40.0 | 3.07e-01 | 77.0% | 63.9% |
| 3636564 | 304.25.1.8 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › SGT1 | 0.54 | 44.0 | 3.53e-01 | 88.0% | 90.0% |
| 4941949 | 304.100.1.1 ↗ | a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS | 0.54 | 39.0 | 4.25e-01 | 75.0% | 98.8% |
| 3740997 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 38.0 | 3.89e-01 | 100.0% | 78.9% |
| 3985253 | 304.28.1.8 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › YggL_50S_bp | 0.53 | 37.0 | 3.74e-01 | 73.0% | 80.6% |
| 5045704 | 304.100.1.1 ↗ | a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS | 0.53 | 38.0 | 4.15e-01 | 74.0% | 97.5% |
| 4858971 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 37.0 | 4.16e-01 | 89.0% | 100.0% |
| 3956448 | 304.100.1.1 ↗ | a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS | 0.53 | 37.0 | 4.14e-01 | 74.0% | 94.9% |
| 5063945 | 304.100.1.0 ↗ | a+b two layers › Alpha-beta plaits › PurS-like › PurS-like | 0.53 | 37.0 | 4.09e-01 | 74.0% | 96.2% |
| 3988217 | 241.12.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like | 0.52 | 40.0 | 3.18e-01 | 100.0% | 41.0% |
| 3958388 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.52 | 36.0 | 3.45e-01 | 73.0% | 65.0% |
| 3927982 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 40.0 | 4.07e-01 | 99.0% | 87.4% |
| 3386324 | 304.100.1.1 ↗ | a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS | 0.51 | 38.0 | 4.22e-01 | 81.0% | 100.0% |
| 4101334 | 304.28.1.3 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD-TM1 | 0.51 | 35.0 | 3.73e-01 | 73.0% | 85.6% |
| 3439481 | 3781.1.1.1 ↗ | a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N | 0.50 | 28.0 | 3.15e-01 | 98.0% | 69.6% |