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KY290950.1__APU00879.1__X__00071

Bact-Vir

KY290950.1__APU00879.1__X__00071

Identity

Accession:
KY290950 ↗
Kingdom:
phage

Quality

77.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-69
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 62.0 5.27e-01 94.9% 85.4%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 62.0 6.23e-01 98.3% 94.9%
1wjqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 61.0 5.55e-01 94.9% 74.4%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 56.0 5.47e-01 93.2% 79.7%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 58.0 4.82e-01 89.8% 85.9%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 55.0 5.80e-01 86.4% 98.1%
1wjsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 59.0 4.63e-01 94.9% 44.9%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.70 58.0 4.36e-01 93.2% 53.4%
3cp7A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.69 50.0 4.06e-01 78.0% 84.7%
2k5fA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.68 59.0 5.34e-01 100.0% 88.0%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 59.0 4.59e-01 96.6% 48.8%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.68 59.0 4.44e-01 100.0% 57.0%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.68 57.0 5.45e-01 93.2% 100.0%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 59.0 5.43e-01 100.0% 80.5%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 59.0 5.59e-01 100.0% 97.1%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.66 57.0 5.23e-01 96.6% 83.1%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 58.0 5.78e-01 100.0% 93.5%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 55.0 5.40e-01 98.3% 85.7%
2ky9A01 2.30.30.1130 Mainly Beta › Roll › SH3 type barrels. › 0.66 54.0 5.24e-01 91.5% 86.6%
5z8lA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.66 58.0 4.65e-01 100.0% 68.9%
2o8lA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 50.0 4.13e-01 83.1% 85.1%
1b12C01 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.64 55.0 4.46e-01 100.0% 55.4%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 56.0 4.31e-01 98.3% 45.1%
2k5iA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.64 54.0 4.92e-01 100.0% 86.9%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 52.0 5.17e-01 88.1% 100.0%
2vgmA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.64 56.0 4.46e-01 100.0% 70.5%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 50.0 4.99e-01 88.1% 91.9%
2mc2A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.62 47.0 3.35e-01 86.4% 94.2%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 48.0 4.67e-01 86.4% 89.6%
1jj2Y00 2.20.25.30 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.60 43.0 4.06e-01 88.1% 61.6%
1qftB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 47.0 3.50e-01 89.8% 59.8%
5hmaA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 44.0 3.87e-01 81.4% 88.5%
2vgeA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.58 47.0 3.43e-01 100.0% 48.3%
1ihjA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.58 39.0 3.47e-01 71.2% 76.6%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 44.0 4.40e-01 91.5% 100.0%
3kbgA03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 43.0 4.45e-01 91.5% 89.3%
5ahoA01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.57 42.0 3.05e-01 83.1% 26.7%
3c5mA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 45.0 2.73e-01 86.4% 74.5%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 43.0 4.24e-01 88.1% 83.1%
4mxtA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.57 47.0 3.38e-01 96.6% 79.7%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.56 40.0 4.13e-01 78.0% 96.4%
3licA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 38.0 2.83e-01 74.6% 29.8%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.55 47.0 4.15e-01 100.0% 98.9%
1dp4C02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 41.0 2.86e-01 81.4% 33.3%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 42.0 3.34e-01 91.5% 81.8%
1bp1A01 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.54 42.0 3.11e-01 89.8% 73.9%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.53 43.0 3.26e-01 100.0% 56.4%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.52 41.0 3.57e-01 86.4% 96.8%
2xzm901 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.51 33.0 3.11e-01 74.6% 52.8%
3w9aA00 2.60.120.1160 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 2.89e-01 100.0% 59.5%
ECOD (81)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3498280 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 56.0 4.29e-01 88.1% 36.2%
3768346 4.1.1.226 beta barrels › SH3 › SH3 › SH3 › KDM3B_Tudor 0.75 68.0 6.25e-01 100.0% 86.7%
3627842 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 65.0 5.60e-01 100.0% 62.2%
3393347 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 64.0 5.51e-01 100.0% 62.2%
3577224 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 64.0 5.53e-01 100.0% 62.2%
3707634 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 61.0 6.30e-01 98.3% 98.2%
3878271 101.1.2.284 alpha arrays › HTH › HTH › winged helix domain › WAC_Acf1_DNA_bd 0.73 61.0 4.43e-01 94.9% 34.8%
3497365 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.73 61.0 6.29e-01 91.5% 100.0%
3508441 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 64.0 5.40e-01 100.0% 60.0%
4105328 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.72 60.0 5.87e-01 93.2% 83.1%
3795223 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 55.0 4.82e-01 88.1% 56.5%
3551576 4.1.1.226 beta barrels › SH3 › SH3 › SH3 › KDM3B_Tudor 0.72 65.0 5.95e-01 100.0% 82.7%
3246086 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 65.0 5.49e-01 100.0% 65.3%
3628131 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.72 62.0 5.19e-01 100.0% 57.0%
3584364 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 55.0 5.88e-01 88.1% 96.0%
3576438 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 63.0 5.44e-01 100.0% 64.4%
3579591 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.71 59.0 6.14e-01 93.2% 98.2%
3414912 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 61.0 5.03e-01 100.0% 53.3%
3766659 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.71 63.0 6.26e-01 100.0% 95.0%
4002679 4.1.1.322 beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.71 60.0 4.73e-01 100.0% 45.8%
3416068 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.71 64.0 4.64e-01 100.0% 70.3%
3753231 4.1.1.226 beta barrels › SH3 › SH3 › SH3 › KDM3B_Tudor 0.70 63.0 5.69e-01 100.0% 80.0%
3997949 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 62.0 5.37e-01 100.0% 64.4%
3924213 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 59.0 5.04e-01 100.0% 57.9%
3609629 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 60.0 5.10e-01 100.0% 58.9%
3495880 4.1.1.315 beta barrels › SH3 › SH3 › SH3 › SH3_12, XRN1_D1 0.70 62.0 3.69e-01 100.0% 17.2%
3405627 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 59.0 5.06e-01 100.0% 58.9%
3761319 4.1.1.253 beta barrels › SH3 › SH3 › SH3 › DUF4537 0.69 57.0 5.56e-01 91.5% 98.5%
3787586 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 61.0 4.98e-01 100.0% 54.3%
3195050 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 60.0 5.11e-01 100.0% 60.0%
3840677 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 61.0 5.09e-01 100.0% 58.0%
3512902 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.69 59.0 6.06e-01 94.9% 100.0%
3793656 4.1.1.169 beta barrels › SH3 › SH3 › SH3 › DUF4819 0.69 61.0 4.58e-01 100.0% 40.7%
3510676 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 60.0 5.12e-01 100.0% 61.1%
4420173 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.68 60.0 5.56e-01 100.0% 77.3%
4524466 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 58.0 5.53e-01 100.0% 80.0%
3575865 4.1.1.169 beta barrels › SH3 › SH3 › SH3 › DUF4819 0.68 60.0 5.74e-01 100.0% 88.6%
3184389 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 61.0 4.33e-01 100.0% 52.0%
3780847 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.68 61.0 4.49e-01 100.0% 69.3%
4470603 4.1.1.217 beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.68 59.0 4.25e-01 100.0% 34.5%
4427477 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 60.0 5.15e-01 100.0% 67.4%
3520654 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.68 60.0 4.47e-01 100.0% 68.7%
3759446 4.1.1.73 beta barrels › SH3 › SH3 › SH3 › Cul7 0.68 59.0 5.18e-01 100.0% 82.2%
3374528 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.68 57.0 3.56e-01 94.9% 30.9%
3730229 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.67 61.0 5.63e-01 100.0% 80.0%
3910433 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 60.0 5.84e-01 100.0% 90.8%
3317030 4.1.1.366 beta barrels › SH3 › SH3 › SH3 › PF26738 0.67 60.0 6.02e-01 100.0% 100.0%
4574546 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 59.0 5.73e-01 100.0% 96.9%
1394554 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.66 58.0 5.71e-01 100.0% 90.6%
3738641 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.66 59.0 5.48e-01 100.0% 80.0%
3672445 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 59.0 4.43e-01 100.0% 41.4%
3519774 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 57.0 4.77e-01 100.0% 57.1%
3224512 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 58.0 4.83e-01 100.0% 82.5%
3473205 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 58.0 4.26e-01 100.0% 80.6%
5038570 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.65 57.0 4.54e-01 100.0% 52.5%
3342267 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.65 54.0 3.90e-01 94.9% 82.2%
3823780 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.64 56.0 5.18e-01 98.3% 84.0%
None 0.64 56.0 4.07e-01 100.0% 60.0%
3231925 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 56.0 4.71e-01 100.0% 84.0%
3802925 4.1.1.296 beta barrels › SH3 › SH3 › SH3 › TDBD 0.63 50.0 4.59e-01 88.1% 92.5%
4122525 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 54.0 5.04e-01 100.0% 85.3%
3367161 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.63 54.0 4.10e-01 98.3% 75.2%
3518574 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.63 46.0 3.37e-01 78.0% 58.7%
3355992 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 44.0 4.87e-01 81.4% 95.6%
4138563 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 50.0 4.93e-01 89.8% 81.5%
4091379 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 53.0 5.07e-01 98.3% 91.4%
3286662 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.62 53.0 4.53e-01 100.0% 65.0%
4034320 4.1.1.398 beta barrels › SH3 › SH3 › SH3 › YolD 0.61 53.0 5.10e-01 100.0% 95.6%
4940673 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 51.0 5.12e-01 98.3% 96.7%
3506886 1.1.13.58 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Trypsin 0.59 47.0 3.26e-01 86.4% 73.0%
3737863 708.1.2.11 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › STEEP1 0.59 41.0 3.41e-01 74.6% 41.0%
3503641 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.59 48.0 3.42e-01 91.5% 77.7%
5033892 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 50.0 4.87e-01 98.3% 95.4%
3509896 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.58 48.0 3.13e-01 91.5% 54.8%
3505198 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.58 45.0 3.17e-01 86.4% 55.4%
3506893 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.56 47.0 3.00e-01 91.5% 61.0%
4012157 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.55 46.0 2.86e-01 100.0% 26.1%
3784576 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 45.0 3.83e-01 100.0% 89.5%
3358110 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 37.0 4.17e-01 91.5% 97.8%
3873854 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 44.0 2.39e-01 100.0% 8.0%
3478046 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.51 42.0 2.98e-01 94.9% 95.9%