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KY290950.1__APU00881.1__X__00073

Bact-Vir

KY290950.1__APU00881.1__X__00073

Identity

Accession:
KY290950 ↗
Kingdom:
phage

Quality

82.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aeromonas_phage_59.1

TaxID: 1932903

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-72
PDB
Domain cluster: rep: OR062530.1__WIL79627.1__NWUPM366V_52__00052__D2-76
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 64.0 6.10e-01 88.7% 86.4%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 47.0 5.32e-01 70.4% 100.0%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.69 47.0 5.24e-01 70.4% 92.6%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.69 46.0 5.23e-01 73.2% 94.2%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 5.10e-01 88.7% 87.5%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.66 53.0 5.26e-01 90.1% 98.7%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 54.0 5.37e-01 90.1% 87.7%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.66 56.0 4.69e-01 100.0% 61.8%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.65 44.0 4.88e-01 73.2% 87.7%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.65 49.0 5.06e-01 83.1% 100.0%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 55.0 4.52e-01 100.0% 54.6%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 49.0 4.44e-01 81.7% 81.2%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.63 46.0 4.84e-01 77.5% 100.0%
4kc3A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.62 45.0 3.72e-01 78.9% 100.0%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.62 42.0 4.53e-01 73.2% 86.4%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.61 51.0 3.91e-01 97.2% 64.3%
2db9A01 3.90.70.200 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Plus-3 domain 0.61 52.0 4.31e-01 98.6% 90.2%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 43.0 4.46e-01 76.1% 87.7%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.59 46.0 4.24e-01 90.1% 71.6%
1vwxY00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 46.0 3.86e-01 88.7% 55.2%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.57 46.0 4.16e-01 88.7% 65.3%
4rlzA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.57 44.0 3.90e-01 85.9% 99.1%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.57 44.0 4.28e-01 85.9% 100.0%
2nqlA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 37.0 2.92e-01 70.4% 96.4%
2hzmA02 2.20.140.20 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › 0.54 38.0 3.62e-01 74.6% 97.6%
5dzeA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 3.24e-01 91.5% 75.4%
2f1eA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.54 37.0 3.12e-01 71.8% 92.2%
1vjvA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 44.0 2.99e-01 95.8% 65.7%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 43.0 2.88e-01 94.4% 73.4%
3es1A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 39.0 3.30e-01 97.2% 44.4%
1e1hA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.52 37.0 2.66e-01 77.5% 54.0%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.60e-01 98.6% 78.8%
6vbkA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.52 41.0 3.62e-01 90.1% 97.3%
1ypoA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.51 43.0 3.67e-01 100.0% 90.0%
5xrkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.55e-01 98.6% 94.3%
2q1fA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.51 43.0 3.39e-01 98.6% 57.5%
2x8kA03 2.60.120.860 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 3.54e-01 88.7% 91.9%
3m9zA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.51 42.0 3.67e-01 100.0% 91.1%
2bbaA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 42.0 3.25e-01 100.0% 62.2%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3267329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 63.0 5.19e-01 93.0% 97.6%
4011604 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.72 56.0 5.51e-01 83.1% 90.7%
5005813 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 49.0 5.57e-01 83.1% 100.0%
1114686 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.72 48.0 5.32e-01 70.4% 87.5%
3290899 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.70 52.0 5.28e-01 78.9% 91.4%
4205717 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 60.0 5.77e-01 94.4% 93.8%
3576128 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 60.0 5.13e-01 95.8% 84.3%
3357709 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.69 52.0 4.95e-01 81.7% 87.1%
4124780 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 57.0 5.68e-01 93.0% 98.6%
4216845 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 58.0 5.78e-01 94.4% 100.0%
3385461 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.68 59.0 4.74e-01 98.6% 57.2%
4342110 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 57.0 5.72e-01 94.4% 100.0%
4212091 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 52.0 5.42e-01 83.1% 100.0%
3830187 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 49.0 5.48e-01 83.1% 100.0%
3294392 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.66 53.0 4.97e-01 85.9% 74.1%
4505797 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 51.0 5.26e-01 84.5% 100.0%
4660084 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 53.0 5.38e-01 88.7% 100.0%
3576438 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 54.0 5.00e-01 90.1% 77.8%
3228278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 51.0 5.35e-01 88.7% 93.8%
4084850 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 50.0 5.24e-01 84.5% 100.0%
4026957 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 49.0 5.23e-01 81.7% 100.0%
3780847 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.64 50.0 3.93e-01 84.5% 72.0%
3398093 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.64 48.0 5.16e-01 83.1% 96.7%
3765289 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 53.0 4.91e-01 91.5% 76.7%
4938445 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.64 55.0 4.53e-01 98.6% 55.6%
3457106 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.64 50.0 5.18e-01 84.5% 98.5%
4629022 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.64 47.0 4.79e-01 78.9% 81.4%
3274551 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 52.0 5.14e-01 90.1% 92.0%
3520654 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.63 49.0 3.87e-01 84.5% 72.0%
3574238 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 52.0 4.64e-01 90.1% 68.0%
2575643 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.63 44.0 4.46e-01 76.1% 75.4%
3244497 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.62 49.0 3.91e-01 87.3% 73.3%
4940673 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 47.0 4.98e-01 81.7% 100.0%
3926175 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 50.0 4.72e-01 88.7% 78.8%
3883159 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 53.0 4.91e-01 95.8% 80.0%
4118226 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.97e-01 90.1% 100.0%
3795301 4.1.1.319 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.61 49.0 4.72e-01 87.3% 80.0%
4069793 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 48.0 4.90e-01 88.7% 98.6%
3196006 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 50.0 4.07e-01 94.4% 96.6%
5033242 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.61 48.0 4.58e-01 87.3% 72.9%
3967745 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.60 47.0 4.70e-01 87.3% 100.0%
4941637 375.1.4.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain › PyrI_C 0.60 41.0 4.73e-01 71.8% 98.1%
4299932 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 45.0 4.63e-01 81.7% 98.5%
1790393 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 49.0 4.69e-01 91.5% 97.6%
3981111 1.1.7.89 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 0.60 53.0 4.13e-01 100.0% 69.7%
4943161 4.1.1.95 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 0.59 48.0 4.02e-01 91.5% 80.8%
3941958 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 45.0 4.20e-01 83.1% 95.6%
4347922 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 43.0 4.55e-01 78.9% 100.0%
4299920 4004.1.1.3 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.59 44.0 3.44e-01 83.1% 62.7%
4010630 2004.1.1.10 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab 0.58 49.0 3.08e-01 98.6% 20.7%
4977702 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.57 44.0 4.17e-01 84.5% 70.6%
682 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.55 47.0 4.32e-01 100.0% 96.8%
3773047 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 46.0 3.63e-01 98.6% 62.9%
3037891 1.1.7.30 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Astro_capsid_p 0.53 38.0 2.81e-01 77.5% 62.1%
3708356 3156.1.1.0 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related 0.51 43.0 4.11e-01 98.6% 80.0%
3231485 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 44.0 3.48e-01 100.0% 86.9%
5055237 4004.1.1.3 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.51 39.0 3.19e-01 90.1% 71.2%
4312625 70.2.1.5 ↗ beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD 0.50 41.0 3.02e-01 93.0% 83.4%
4167365 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.50 42.0 3.95e-01 100.0% 95.8%