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KY290957.1__APU02066.1__X__00014

Bact-Vir

KY290957.1__APU02066.1__X__00014

Identity

Accession:
KY290957 ↗
Kingdom:
phage

Quality

88.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Biquartavirus› Aeromonas_phage_Riv-10

TaxID: 1932906

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-69
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 46.0 5.21e-01 100.0% 90.0%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 46.0 5.11e-01 100.0% 88.2%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.69 55.0 5.34e-01 100.0% 77.6%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 48.0 5.13e-01 100.0% 86.0%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 44.0 4.42e-01 100.0% 63.4%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 44.0 4.61e-01 100.0% 71.4%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 46.0 5.16e-01 100.0% 94.1%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 48.0 5.23e-01 100.0% 94.3%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 44.0 4.86e-01 100.0% 88.5%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.66 46.0 5.12e-01 100.0% 98.0%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 44.0 5.01e-01 100.0% 100.0%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 49.0 4.73e-01 100.0% 69.6%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.66 48.0 4.86e-01 100.0% 79.1%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 44.0 4.69e-01 100.0% 81.4%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 47.0 5.01e-01 100.0% 89.8%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.64 54.0 5.30e-01 100.0% 87.8%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.64 42.0 4.62e-01 100.0% 88.5%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 41.0 4.04e-01 100.0% 63.0%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.62 50.0 3.51e-01 100.0% 28.2%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 46.0 4.78e-01 100.0% 91.7%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 45.0 4.64e-01 100.0% 85.9%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.60 39.0 4.27e-01 100.0% 85.2%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.60 36.0 4.12e-01 97.1% 89.1%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 47.0 4.67e-01 100.0% 85.1%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 4.38e-01 100.0% 79.2%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 44.0 4.30e-01 100.0% 76.6%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 43.0 4.41e-01 100.0% 86.6%
8bddA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 44.0 2.89e-01 91.2% 41.7%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.56 37.0 3.88e-01 100.0% 80.7%
3p8aA02 2.60.40.4320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 33.0 3.03e-01 91.2% 43.3%
1ebdA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 47.0 4.01e-01 100.0% 95.9%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 3.63e-01 100.0% 56.2%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 41.0 4.15e-01 100.0% 84.6%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 46.0 3.85e-01 100.0% 91.0%
4ertA01 1.10.490.160 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.54 42.0 3.38e-01 92.6% 91.4%
3n8hA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.54 45.0 4.37e-01 92.6% 96.1%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 3.47e-01 100.0% 50.4%
1pxfA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 39.0 3.44e-01 82.4% 72.1%
3m2oA01 3.30.720.120 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.53 30.0 3.34e-01 89.7% 69.8%
5bncA02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.52 46.0 4.18e-01 98.5% 74.2%
3zl8A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.52 42.0 3.05e-01 94.1% 76.1%
2grgA01 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.52 38.0 3.67e-01 94.1% 67.5%
6l6jA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 43.0 3.58e-01 100.0% 92.6%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3510526 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 49.0 5.33e-01 100.0% 83.6%
3765274 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 49.0 4.42e-01 100.0% 52.2%
4994957 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 45.0 4.94e-01 100.0% 78.2%
4952887 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 44.0 4.81e-01 100.0% 76.4%
3671986 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.72 46.0 4.63e-01 100.0% 64.3%
4992872 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 44.0 4.88e-01 100.0% 78.2%
4121981 4.1.1.325 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, KOW2_Spt5 0.72 46.0 3.78e-01 100.0% 36.0%
4946165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 44.0 4.79e-01 100.0% 76.4%
4950396 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 43.0 4.71e-01 100.0% 74.5%
4997767 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 41.0 4.87e-01 95.6% 86.7%
5070745 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 41.0 4.87e-01 95.6% 86.7%
3721794 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 47.0 4.94e-01 100.0% 76.7%
3931905 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 46.0 3.86e-01 100.0% 39.1%
4975150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 45.0 4.76e-01 100.0% 73.3%
3651961 4.1.1.251 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5 0.70 46.0 4.95e-01 100.0% 81.8%
5079023 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 42.0 4.94e-01 98.5% 91.1%
5025079 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 44.0 4.78e-01 100.0% 78.2%
5033075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 44.0 4.74e-01 100.0% 78.2%
5058671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 43.0 4.63e-01 100.0% 76.4%
3461921 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.69 52.0 4.65e-01 100.0% 56.0%
4058174 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 46.0 4.73e-01 100.0% 72.3%
5056706 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 41.0 4.66e-01 100.0% 82.0%
3909317 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 48.0 5.34e-01 94.1% 100.0%
5017214 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 43.0 4.73e-01 100.0% 80.0%
4990212 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 43.0 4.65e-01 100.0% 78.2%
5040416 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 43.0 4.80e-01 100.0% 86.0%
4863023 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.68 43.0 4.85e-01 94.1% 89.6%
3218198 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 44.0 4.78e-01 100.0% 81.8%
3275404 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 44.0 4.65e-01 100.0% 75.0%
5013926 375.8.1.8 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › CPxCG_zf 0.68 36.0 4.65e-01 85.3% 100.0%
3765126 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 51.0 5.52e-01 100.0% 100.0%
4011604 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.68 46.0 4.46e-01 100.0% 64.0%
3581611 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 39.0 4.36e-01 73.5% 76.0%
4015071 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 45.0 4.50e-01 100.0% 67.1%
3934527 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 47.0 5.09e-01 100.0% 94.5%
4330934 4.1.1.76 ↗ beta barrels › SH3 › SH3 › SH3 › NdhO 0.66 53.0 5.10e-01 100.0% 77.5%
1140051 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 44.0 4.94e-01 100.0% 98.0%
3474715 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 42.0 4.36e-01 100.0% 69.2%
3570399 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 45.0 4.59e-01 100.0% 75.4%
3469800 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 48.0 4.54e-01 100.0% 66.3%
3938908 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 45.0 4.48e-01 100.0% 72.9%
3633647 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.62 42.0 4.29e-01 70.6% 84.6%
3406803 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.62 45.0 4.50e-01 100.0% 75.7%
4582456 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.62 38.0 3.80e-01 83.8% 60.0%
3482646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 45.0 3.27e-01 100.0% 27.5%
5079456 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.58 40.0 3.00e-01 72.1% 46.7%
538 4.1.1.120 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_16 0.58 47.0 4.64e-01 100.0% 85.1%
3923813 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 43.0 4.46e-01 100.0% 86.2%
3730875 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.57 40.0 3.65e-01 75.0% 94.7%
3509095 3425.2.1.3 ↗ a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH C-terminal domain › YycH C-terminal domain › PF29809 0.56 44.0 2.85e-01 86.8% 35.5%
5044385 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.55 40.0 2.84e-01 85.3% 24.8%
4999847 4333.1.1.0 ↗ a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.55 44.0 2.87e-01 88.2% 40.3%
3842631 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.55 39.0 3.93e-01 100.0% 75.7%
None — 0.54 40.0 2.33e-01 83.8% 44.4%
5028212 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.53 44.0 3.55e-01 95.6% 72.3%
1260456 283.1.1.3 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase 0.53 44.0 4.20e-01 92.6% 89.0%
3386971 3675.1.1.0 ↗ a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain 0.53 38.0 3.17e-01 77.9% 65.4%
1713365 223.1.1.51 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › MCP-like_PDC_1 0.53 41.0 3.29e-01 94.1% 57.1%
4932368 2005.1.1.17 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.52 43.0 2.91e-01 94.1% 57.4%
3311830 708.1.1.7 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut 0.51 39.0 3.05e-01 79.4% 70.4%
4998620 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.51 42.0 2.87e-01 97.1% 44.6%
4404324 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 44.0 4.14e-01 98.5% 78.8%
3244701 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.50 38.0 2.90e-01 83.8% 47.8%
3698212 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.50 40.0 2.69e-01 97.1% 45.1%